Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0778
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    28   0.65 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   2.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   4.6  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   6.1  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.0  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.0  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.0  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 472 CSEQTDTKQQDELATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSK 293
           C +  D +Q + LATS LST     +  + +  + TP      FAS +     S+N   +
Sbjct: 127 CGDVDDEQQFNSLATSPLSTETQSEV-SDPLLDTLTPNSLESSFASISLNSFTSANEFIQ 185

Query: 292 VTSRPSTKKL 263
              R ++ KL
Sbjct: 186 FLKRLASSKL 195


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 400 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVT-SRPS 275
           H P++ +  +  P  T  K   STF+R HSS+T S  + S PS
Sbjct: 390 HRPRKNINFTPLPPSTPSK--PSTFVRPHSSSTDSPPSPSTPS 430


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 379 TTSCTPRRT--TKKFASSTFMRRHSSNTSSKVTSRPST 272
           +TS  P +T  +  F SST +   SS+TSS  +S+ ST
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDST 296


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 303 PPARSLQGLRQKN*SARSKAVNFVGN 226
           PP ++L+  RQK  +   K + FVGN
Sbjct: 73  PPHKTLKSKRQKGKNNDRKVILFVGN 98


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  EGWVPGRSLVEVKSTRNKCVLVERLRS 132
           +GWVPG++L  V+    K  ++  L S
Sbjct: 127 DGWVPGKTLFPVEEAIKKGSIIMNLLS 153


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -3

Query: 245 QSTL-WATTGRRTPIYS--KKTSSNSTSV 168
           QS L ++T  RRTP YS   +T S+STSV
Sbjct: 93  QSLLPFSTEVRRTPTYSVMNETDSSSTSV 121


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -2

Query: 189 FLQFYQ--RSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQLYKRI 31
           F  F Q  R    N +R+L   P   N Y+   S L  Y+   R  + Y   K +
Sbjct: 15  FFSFKQTKRKKNKNKKRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKAL 69


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 356 NYEEIRFLDIYEKTFFQYLQQGHFKAFDKKIDLHVAKQSTLWATT 222
           N+EEI  + +  K  F    QGH    +K     + KQ +L +TT
Sbjct: 398 NHEEINSIPLRNKNIFVPPSQGHSPLLEK-----IKKQGSLPSTT 437


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 361 RRTTKKFASSTFMRRHSSNTSSKVTSRPSTK 269
           R +T+ F  S   +RH+S +SS  + RPS +
Sbjct: 4   RDSTRDFNRSRPEKRHASRSSSPRSFRPSNQ 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,494
Number of Sequences: 5004
Number of extensions: 32535
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)