Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0778
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302...    29   1.5  
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342...    27   6.0  
04_04_1691 - 35393728-35394585                                         27   6.0  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    27   8.0  

>06_03_1404 -
           29928792-29929040,29929147-29929551,29930130-29930280,
           29930363-29930501,29930578-29930743,29930826-29931041,
           29931142-29931323,29931412-29931538,29931974-29932112,
           29932227-29932353,29932501-29932612,29932704-29932784,
           29933330-29933483,29933569-29933689,29934003-29934045,
           29934356-29934460
          Length = 838

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 392 QRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAFD--KKIDLHVAKQSTL 234
           ++S   E  T+KNYE I F D  ++   QYL     K F    K  L + K S L
Sbjct: 607 EKSPFLERLTKKNYEVIYFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKL 661


>05_03_0634 +
           16432679-16433076,16433358-16433610,16433993-16434291,
           16434553-16434729,16435001-16435621,16435690-16435784,
           16436000-16436088,16436185-16436250,16436475-16437026,
           16437879-16437953,16438305-16438375,16438456-16438513,
           16441506-16442048
          Length = 1098

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -1

Query: 439 ELATSRLSTPFIIHL-----PKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSR 281
           E  TSRL     I L     P+E+ +T CT R ++  F     M+ + S+ S+K   R
Sbjct: 78  EPKTSRLDVKKSISLILGISPEESTSTPCTGRNSSLPFEEIRRMKNNLSDISNKARER 135


>04_04_1691 - 35393728-35394585
          Length = 285

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 314 FFQYLQQGHFKAFDKKIDLHVAKQSTLWATTGRRTPIYSKKTSSNSTSV 168
           FF Y  + +  A       + A  +  W  TGR  P+ S   SS+S +V
Sbjct: 66  FFSYKDRKYPSARGTGTRTNRATAAGFWKATGRDKPVLSSSRSSSSPAV 114


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 412 PFIIHLPKEAMTTSCTPRR-TTKKFASSTFMRRHSSNTSSKVTSRPS 275
           P   H P  A     TPRR  T   ASS    RH+S++SS  +S PS
Sbjct: 20  PAAAHAPNSAAAACSTPRRGKTSPHASS----RHASSSSSS-SSLPS 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,524
Number of Sequences: 37544
Number of extensions: 208472
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)