Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0778
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.88
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 29 2.7
SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29) 28 3.6
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092) 28 3.6
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22) 28 3.6
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 28 3.6
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 28 3.6
SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5) 28 4.7
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 27 8.2
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 30.7 bits (66), Expect = 0.67
Identities = 28/78 (35%), Positives = 35/78 (44%)
Frame = -1
Query: 487 RSHHKCSEQTDTKQQDELATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSS 308
RSH + S T T R S H + + TT RR + AS T R SS
Sbjct: 1099 RSHTRRSSNTTRSH-----TGRSSNTTRSHTRRSSNTTRGHTRRQVTQLASHT---RRSS 1150
Query: 307 NTSSKVTSRPSTKKLICT 254
NT+ + T RPS K+L T
Sbjct: 1151 NTTRRHTRRPS-KQLAVT 1167
>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 30.3 bits (65), Expect = 0.88
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -1
Query: 466 EQTDTKQQDELATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVT 287
+Q + + TS+ S + TTS +P R KK SS +R SS++SS
Sbjct: 36 KQRNAQSSSSTETSQRSRARKRQSSSSSSTTSSSPERNIKK-KSSKAPKRQSSSSSSSSP 94
Query: 286 SRPSTKK 266
R + KK
Sbjct: 95 KRKTKKK 101
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 272 KKIDLHVAKQSTLWATTGRRTPIYSKKT 189
+K++ HVA T T GR+TP+ K+T
Sbjct: 1164 EKLNKHVASVRTKIVTPGRKTPVTPKRT 1191
>SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)
Length = 294
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 216 TNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQ 46
T AD+F +D FYQ+S + ++ +PK SA Y S + P+ YQ
Sbjct: 54 TRADMFYQDPFLFYQQSPHYSPHNIVPPSPKYSPHLMGDCSAQSAYFVS-KQPSHYQ 109
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -1
Query: 367 TPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLI 260
TPRR T++F+++T + +SNT+ ++ + + + I
Sbjct: 531 TPRRLTQRFSTATTLLAQTSNTTKELGKKYAKSRSI 566
>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
Length = 729
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 267 N*SARSKAVNFVGNYWQTNADLFEEDFLQFYQRSYEVNA-RRVLGAAPKPFNQYT 106
N + R N G WQ+ ADL + F R ++N +++L A K +Y+
Sbjct: 240 NRNFRFPRYNGTGGIWQSVADLLPRSWFHFENRVVQLNIDKKILTVASKDGAKYS 294
>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
Length = 1197
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 360 EELRRNSLPRHL*EDILPIPPARSLQGLRQKN*SARSKAVNFVGNYWQTNAD 205
+E+ R P+ + P PP L+G + SA AV + N W+T+AD
Sbjct: 898 QEMSRTRGPKDGRKPPPPPPPRVDLEGAVVGDTSAPPSAVASIPNTWETSAD 949
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1
Query: 454 TKQQDELATS---RLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTS 284
+K+ D+++TS R S P +A ++ TPR+TT+K S +R S +
Sbjct: 973 SKESDKVSTSDSKRSSVKDKSQSPSKAESSERTPRKTTEKSPSGKGVRGKDERKDSPKEA 1032
Query: 283 RPST 272
R T
Sbjct: 1033 RKKT 1036
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1
Query: 454 TKQQDELATS---RLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTS 284
+K+ D+++TS R S P +A ++ TPR+TT+K S +R S +
Sbjct: 332 SKESDKVSTSDSKRSSVKDKSQSPSKAESSERTPRKTTEKSPSGKGVRGKDERKDSPKEA 391
Query: 283 RPST 272
R T
Sbjct: 392 RKKT 395
>SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 383 NDYELHTEKNYEEIRFLDIYEK 318
+DYEL T NYE +R ++ YE+
Sbjct: 2 HDYELCTTMNYERLRTMNDYER 23
>SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5)
Length = 192
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 225 YWQTNADLFEEDFLQFYQRSYEVNARRVLGA--APKPFNQYTFIPSALDFYQTSA 67
Y T L ++ LQFY + Y + PK + QYTF + + Y +SA
Sbjct: 93 YIPTCVQLRHKNLLQFYVKKYVACLMFATSSDFCPKEYEQYTFADTWIASYLSSA 147
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 373 SCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPST 272
S R KF+S+T+ R+ S+ S VTS+ T
Sbjct: 2937 SADSRNKIDKFSSTTYSRKKESSGKSDVTSKTVT 2970
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,182
Number of Sequences: 59808
Number of extensions: 228224
Number of successful extensions: 703
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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