Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0778
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00...    28   3.8  
At4g37190.1 68417.m05265 expressed protein                             27   5.1  
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit...    27   5.1  
At1g69230.2 68414.m07930 expressed protein                             27   5.1  
At1g69230.1 68414.m07929 expressed protein                             27   5.1  
At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9...    27   6.7  

>At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 383

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -2

Query: 345 NSLPRHL*EDILPIPPARSLQGLRQKN*SARSKAVNFVGN---YWQTNADLFEEDFLQFY 175
           +SLP  L EDIL   PA SL+ LR     +  K  NF+ N   + + + D  E+ FL   
Sbjct: 10  SSLPWDLVEDILARVPATSLKRLR-----STCKQWNFLFNDQIFTKMHFDKAEKQFLVLI 64

Query: 174 QRSYEV 157
            R Y V
Sbjct: 65  LRLYTV 70


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 290 DLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDNKRS 415
           +L G +G MSS   RG+ +   SS  +  S  +FG +D +RS
Sbjct: 71  NLKGALGTMSS---RGTLYNEGSSSRSDSSATWFGDVDTQRS 109


>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 894

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 231 GNYWQTNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPA 55
           G   Q +A L  +D   FY   +E N++ VL      FN+ TF  +A    Q     PA
Sbjct: 676 GQGLQISAQLSRKDGQVFYSMLFENNSQSVLDGFMIQFNKNTFGLAAAGSLQIPPLHPA 734



 Score = 26.6 bits (56), Expect = 8.9
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -1

Query: 469 SEQTDTKQQDELATSRLSTPFIIHLPKEAMTT--SCTPRRT-TKKFASSTFMRRHSSNTS 299
           S Q D    DEL T+  +   + H P EA  T    T ++T  + FA  +     SSN  
Sbjct: 553 SNQLDPSLLDELLTNISTLSSVYHKPPEAFVTRLKTTVQKTEDEDFAEGSEAGYSSSNPV 612

Query: 298 SKVTSRP 278
               S P
Sbjct: 613 DSAASPP 619


>At1g69230.2 68414.m07930 expressed protein
          Length = 110

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 340 ASSTFMRRHSSNTSSKVTSRPSTK 269
           +++ +MR    NT + +T RPSTK
Sbjct: 67  SANNYMRAEGQNTGNFITDRPSTK 90


>At1g69230.1 68414.m07929 expressed protein
          Length = 110

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 340 ASSTFMRRHSSNTSSKVTSRPSTK 269
           +++ +MR    NT + +T RPSTK
Sbjct: 67  SANNYMRAEGQNTGNFITDRPSTK 90


>At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9) /
           HD-ZIP protein 9 identical to GB:U09341
          Length = 274

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 451 KQQDELATSRLSTPFIIHLPKEAMT 377
           K+  EL T +L+ PF +H+P   +T
Sbjct: 193 KEIQELKTLKLTQPFYMHMPASTLT 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,561
Number of Sequences: 28952
Number of extensions: 164453
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)