Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0774
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54KA6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q017R3 Cluster: Chromosome 06 contig 1, DNA sequence; n...    34   3.5  
UniRef50_Q0RI79 Cluster: Putative WD-40 repeat protein; n=1; Fra...    33   8.0  

>UniRef50_Q54KA6 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 626

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +3

Query: 381 STLVSTNRHNTNVYYQMIMKTLLRVKLYFLKTSFYR 488
           ST +S N+ NT+   QMI+   L++KL+FLK + ++
Sbjct: 170 STNISLNQRNTSDLLQMILSDKLKLKLFFLKNNQFK 205


>UniRef50_Q017R3 Cluster: Chromosome 06 contig 1, DNA sequence; n=2;
           Ostreococcus|Rep: Chromosome 06 contig 1, DNA sequence -
           Ostreococcus tauri
          Length = 700

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 344 EATELNESNIKQNN-EPNNTRSVAN*LIALLHETNTK 237
           EA EL ++++K+NN +P NT      LIALLH   T+
Sbjct: 556 EACELRKNDVKKNNKDPENTAETLPELIALLHVLETR 592


>UniRef50_Q0RI79 Cluster: Putative WD-40 repeat protein; n=1;
           Frankia alni ACN14a|Rep: Putative WD-40 repeat protein -
           Frankia alni (strain ACN14a)
          Length = 1567

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 326 HLVRSLPGRGRPLRHRHILDLG 391
           HL R+LP  G P  HRH  DLG
Sbjct: 224 HLARTLPAAGHPRPHRHSADLG 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,997,916
Number of Sequences: 1657284
Number of extensions: 10104002
Number of successful extensions: 25655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25586
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)