Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0774
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.8  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 203 NYMYHEPSTVTSNYNSYTDEVN 138
           NY Y   +   +NYN+Y +  N
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNN 342


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/66 (21%), Positives = 28/66 (42%)
 Frame = -3

Query: 350 YREATELNESNIKQNNEPNNTRSVAN*LIALLHETNTK*VYNEWIYKIQNYMYHEPSTVT 171
           YR+  E ++   +   E   +R        ++   + K ++N   Y   NY  +  +   
Sbjct: 289 YRKYRERSKERSRDRTERERSREPK-----IISSLSNKTIHNNNNYNNNNYNNNYNNYNN 343

Query: 170 SNYNSY 153
           +NYN+Y
Sbjct: 344 NNYNNY 349


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 203 NYMYHEPSTVTSNYNSYTDEV 141
           NY Y   +   +NYN+Y  ++
Sbjct: 88  NYNYSNYNNYNNNYNNYNKKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,801
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)