Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0774
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67350.1 68418.m08493 expressed protein                             29   2.1  
At2g01690.2 68415.m00097 expressed protein                             29   2.7  
At2g01690.1 68415.m00096 expressed protein                             29   2.7  
At5g66540.1 68418.m08389 expressed protein ; supported by full-L...    27   8.3  

>At5g67350.1 68418.m08493 expressed protein 
          Length = 302

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 347 GRGRPLRHRHILDLGLNQPTQ 409
           GR  PLRH   LD GLN+PT+
Sbjct: 93  GRILPLRHSVSLDAGLNEPTR 113


>At2g01690.2 68415.m00097 expressed protein
          Length = 744

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -3

Query: 386 GRGCGDGEAGAPYREATELNESNIKQNNEPNNTRSVAN*LIALLHETNTK*VYNEWIYKI 207
           G   G   +G P+ +    NE    +++  N++    N  + L    N + ++       
Sbjct: 617 GNQIGRATSGVPFSQYKHQNEDGDLEDDNINSSHQGINFAVRLQQFENVQNLHRGQARTR 676

Query: 206 QNYMYHEPSTVTS 168
            NY YH  S+ TS
Sbjct: 677 VNYSYHSSSSSTS 689


>At2g01690.1 68415.m00096 expressed protein
          Length = 743

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -3

Query: 386 GRGCGDGEAGAPYREATELNESNIKQNNEPNNTRSVAN*LIALLHETNTK*VYNEWIYKI 207
           G   G   +G P+ +    NE    +++  N++    N  + L    N + ++       
Sbjct: 616 GNQIGRATSGVPFSQYKHQNEDGDLEDDNINSSHQGINFAVRLQQFENVQNLHRGQARTR 675

Query: 206 QNYMYHEPSTVTS 168
            NY YH  S+ TS
Sbjct: 676 VNYSYHSSSSSTS 688


>At5g66540.1 68418.m08389 expressed protein ; supported by
           full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
          Length = 524

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 415 LVLCRLVETKVEDVAMAKRAPPTGKR 338
           L+  R++E + +DV  A R P  GKR
Sbjct: 350 LIKSRIIEARFDDVQRAPRLPTKGKR 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,614,461
Number of Sequences: 28952
Number of extensions: 211480
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)