Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0770
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    32   0.025
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    29   0.18 
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    29   0.23 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   0.94 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   2.9  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    25   5.0  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   5.0  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   5.0  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    24   6.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   6.7  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   8.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   8.8  

>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 32.3 bits (70), Expect = 0.025
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 273 WSCYCSHFQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKG 94
           W C    FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E  E  
Sbjct: 86  WPC----FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESE 141

Query: 93  EM 88
           EM
Sbjct: 142 EM 143


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +2

Query: 14   LHLRVSSIKTTIYIQYLAKNDLLSFISPFSRA--SLSRSIFCIYDAVSG--TGACSIYLK 181
            LH     I T +Y  YL +N + SFI  FSRA   L  S   + + +SG   G C +   
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEVLSGLEAGQCLLITF 1532

Query: 182  *NLELSLYSLV 214
               +L+++S++
Sbjct: 1533 AQNKLTVHSVL 1543


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = -2

Query: 225 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 91
           +++ TNE K++    L   ++AP+P+ +++I ++   + A +KGE
Sbjct: 6   VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 71  NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 178
           N L+SF +PF +AS+      ++ + + TGA  I+L
Sbjct: 419 NFLISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 17   HLRVSSIKTTIYIQYLAKNDLLSFISPFSRASLSRSIFCIYDAVSGTG 160
            H++ SSI   I++  L KN  + F+   S +  + ++ C +D+    G
Sbjct: 1517 HIKCSSIPADIWVHNLGKNQQV-FLRILSESIKTYTLLCAHDSQKRIG 1563


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 314 NGLSDVINAWILPNGAVIAV 255
           NG+  V+N W+L NG  I +
Sbjct: 653 NGIQRVVNYWLLHNGFSIGI 672


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 174 YIEQAPVPDTASYIQKMERDREAREKGEMKDNRSF 70
           YIE+   PD  +Y+  +ER+       E+ +  ++
Sbjct: 68  YIEEEEDPDLEAYLSDLEREELEHSLEELDEENNY 102


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 71  NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 178
           N L+SF +PF   S+      I+ + + TGA  I+L
Sbjct: 385 NFLISFFTPFITNSIGFKYGYIFASCNLTGAAIIFL 420


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 165 QAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKY 58
           +AP+  T   +Q +   + +++KG M  +RS +  Y
Sbjct: 428 RAPLAMTPDLLQDLTEYKSSKDKGVMMASRSLITLY 463


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 368 NSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVI 261
           N+K  ++ S+V+ Q  L+ GL++     I+P+  VI
Sbjct: 48  NTKYNDFFSNVQDQFELQRGLNNCFAYDIVPSSDVI 83


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 371 ENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 273
           EN+KG+E   S K    +++  S ++N ++ P+
Sbjct: 250 ENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPD 282


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 249 QVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREA 106
           + AN+ + LK   N + L     L+Y   A + D    I+KM ++  A
Sbjct: 773 EAANAMRALK---NTHLLGRHLVLQYASNATMDDMQHAIEKMAKEANA 817


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 115 VTFHFLYI*RSIGNWSLLNIS*VEFRIELILI 210
           VT +F Y+ +  G+W  + +S   F I   LI
Sbjct: 878 VTINFFYLVKDEGSWKDIGVSISHFCISNFLI 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,947
Number of Sequences: 5004
Number of extensions: 26281
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)