Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0770
         (373 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40547| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   3e-11
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    29   1.2  
SB_9654| Best HMM Match : Nop10p (HMM E-Value=2)                       28   2.8  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                28   2.8  
SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)                   27   6.4  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)                26   8.5  
SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  
SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)                  26   8.5  
SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)                   26   8.5  
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  

>SB_40547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 25/46 (54%), Positives = 36/46 (78%)
 Frame = -2

Query: 171 IEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVLI 34
           I   P+PDT +Y+Q+ME+++  +  G+ KDNRSFLAKYWMYIV ++
Sbjct: 59  ISNGPLPDTQTYVQRMEKEKRDQAGGKGKDNRSFLAKYWMYIVPIV 104


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  LAKNDLLSFISPFSRASLSRSIFCIYDAVSGTGACSI 172
           LAK+D  S  +P    +  RSIF   DA +G GACS+
Sbjct: 710 LAKDDRYSSRTPAEEHAQLRSIF---DAYAGRGACSV 743



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  LAKNDLLSFISPFSRASLSRSIFCIYDAVSGTGACSI 172
           LAK+D  S  +P    +  RS+F   DA +G GAC++
Sbjct: 19  LAKDDRYSTRTPAEEHAQLRSVF---DAYAGRGACAV 52



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 23  RVSSIKTTIYIQYLAKNDLLSFISPFSRASLSRSIFCIYDAVSGTGACSI 172
           RV   ++ +    LAK+D  S  +P    +  RSIF +Y   +G GAC++
Sbjct: 755 RVLRQRSMLSCAKLAKDDRYSTRTPAEEHAQLRSIFDVY---AGRGACAV 801


>SB_9654| Best HMM Match : Nop10p (HMM E-Value=2)
          Length = 323

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = -2

Query: 168 EQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVLIEET 25
           ++AP  ++A   +   R+++   KG+  D+     + + ++VV  E+T
Sbjct: 263 KKAPEKESADKAENENREKKPMRKGQSCDSDRMTGEVYSFVVVAAEDT 310


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 171 IEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVLIEETRK 19
           IE+AP  + A    +M+ D+   E  E  +NR +  +    +  L +E  K
Sbjct: 709 IEEAPTKEDADNTSQMDEDQNENETEEQFENRRWTKRTHQLLSALKKEFNK 759


>SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)
          Length = 313

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 71  NDLLS--FISPFSRASLSRSIFCIYD-AVSGTGACSIY 175
           ND+L    I P + A  S  +FCIYD  VS   +C  Y
Sbjct: 9   NDILKEDAIKPVTTADNSSYVFCIYDPVVSINASCCKY 46


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 82  ILHFSLFTCLSVTFHFLYI*RSIG--NWSLLNIS*VEFRIELILIS 213
           I HFS+  CL++T + L+   S+G    S+LN   V F + ++ +S
Sbjct: 114 IKHFSIAKCLALTVYPLHYCLSVGIPLLSVLNCLSVTFCLSIVCLS 159


>SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 185 NLELSLYSLVACFSGCVEL 241
           +L + LYS + CFS C+E+
Sbjct: 79  SLVVKLYSAIRCFSACLEI 97


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 249  QVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREARE 100
            Q A+     KQA NE     K      +     D+A+ +QK + + EARE
Sbjct: 5662 QTASFRSQFKQAANETDALLKRIEEINQSRNFEDSAAILQKTKEELEARE 5711


>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
          Length = 784

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 300 CYQCMDTT*WSCYCSHFQVANSTQPLKQATNEYK 199
           C+ C       C   H + ++  +PL +ATN+++
Sbjct: 221 CHTCSTLVCRECAVEHEKPSHDFEPLAEATNDFR 254


>SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 QPLKQATNEYKLNSKFYLRYIEQAPVPDTA 142
           QP+ Q    Y  ++  ++ +IE   +PD+A
Sbjct: 54  QPIAQKQKSYLKDTTHFINFIESTVIPDSA 83


>SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)
          Length = 927

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 QPLKQATNEYKLNSKFYLRYIEQAPVPDTA 142
           QP+ Q    Y  ++  ++ +IE   +PD+A
Sbjct: 565 QPIAQKQKSYLKDTTHFINFIESTVIPDSA 594


>SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 QPLKQATNEYKLNSKFYLRYIEQAPVPDTA 142
           QP+ Q    Y  ++  ++ +IE   +PD+A
Sbjct: 96  QPIAQKQKSYLKDTTHFINFIESTVIPDSA 125


>SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)
          Length = 663

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 QPLKQATNEYKLNSKFYLRYIEQAPVPDTA 142
           QP+ Q    Y  ++  ++ +IE   +PD+A
Sbjct: 433 QPIAQKQKSYLKDTTHFINFIESTVIPDSA 462


>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 231 QPLKQATNEYKLNSKFYLRYIEQAPVPDTA 142
           QP+ Q    Y  ++  ++ +IE   +PD+A
Sbjct: 383 QPIAQKQKSYLKDTMHFINFIESTVIPDSA 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,108,663
Number of Sequences: 59808
Number of extensions: 172049
Number of successful extensions: 474
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)