Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0770
(373 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65270.3 68414.m07401 expressed protein 35 0.020
At1g65270.2 68414.m07400 expressed protein 35 0.020
At1g65270.1 68414.m07399 expressed protein 35 0.020
At1g51370.1 68414.m05779 F-box family protein contains F-box dom... 29 1.3
At5g63760.2 68418.m08003 IBR domain-containing protein contains ... 27 3.0
At5g63760.1 68418.m08002 IBR domain-containing protein contains ... 27 3.0
At5g52180.1 68418.m06477 expressed protein 27 4.0
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 27 5.3
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ... 27 5.3
At2g35080.1 68415.m04304 expressed protein ; expression supporte... 26 7.0
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 26 9.2
At4g30510.2 68417.m04332 transport protein-related weak similari... 26 9.2
At4g03490.1 68417.m00476 ankyrin repeat family protein contains ... 26 9.2
At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family pr... 26 9.2
>At1g65270.3 68414.m07401 expressed protein
Length = 292
Score = 34.7 bits (76), Expect = 0.020
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 207 EYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVL 37
++ NS L+ EQAP T + +++ + E RSF AKYWMY++ L
Sbjct: 203 KWSFNSHTILKSSEQAP--RTPIFTEEILGSENVEGEVEPPPERSFWAKYWMYLIPL 257
>At1g65270.2 68414.m07400 expressed protein
Length = 292
Score = 34.7 bits (76), Expect = 0.020
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 207 EYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVL 37
++ NS L+ EQAP T + +++ + E RSF AKYWMY++ L
Sbjct: 203 KWSFNSHTILKSSEQAP--RTPIFTEEILGSENVEGEVEPPPERSFWAKYWMYLIPL 257
>At1g65270.1 68414.m07399 expressed protein
Length = 292
Score = 34.7 bits (76), Expect = 0.020
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 207 EYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVL 37
++ NS L+ EQAP T + +++ + E RSF AKYWMY++ L
Sbjct: 203 KWSFNSHTILKSSEQAP--RTPIFTEEILGSENVEGEVEPPPERSFWAKYWMYLIPL 257
>At1g51370.1 68414.m05779 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -2
Query: 252 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPV-----PDTASYIQKMERDREAREKGEM 88
F + + ++PL Q LN++FY+ +E P P S I +M +++ R GE
Sbjct: 293 FFLYSKSRPLLQFRYISHLNARFYISDLEMLPTLLESCPKLESLILEMVKNQSTRRHGEK 352
Query: 87 KD 82
++
Sbjct: 353 RE 354
>At5g63760.2 68418.m08003 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 452
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 207 EYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREK--GEMKDNRSFLAKYWMYIVVLI 34
EY + + YLR+++Q S+ Q ++ + EA+E G++ + + ++ + + +
Sbjct: 341 EYDMAKREYLRFLQQNASGIVHSFSQSIKEETEAKELTCGKLLSETTNIGNFFYHFIKTL 400
Query: 33 EE 28
E
Sbjct: 401 RE 402
>At5g63760.1 68418.m08002 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 452
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 207 EYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREK--GEMKDNRSFLAKYWMYIVVLI 34
EY + + YLR+++Q S+ Q ++ + EA+E G++ + + ++ + + +
Sbjct: 341 EYDMAKREYLRFLQQNASGIVHSFSQSIKEETEAKELTCGKLLSETTNIGNFFYHFIKTL 400
Query: 33 EE 28
E
Sbjct: 401 RE 402
>At5g52180.1 68418.m06477 expressed protein
Length = 458
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 148 IGNWSLLNIS*VEFRIELILISGLL*WLRRVSNLEMTAITAPLGSIHALITSERP 312
+GN +L+ +FR+ +L+SGLL + NL+M A L L S+ P
Sbjct: 310 VGNVGMLSDDFAKFRVLCLLLSGLLQAMAVRPNLQMFLNEAVLSWYQRLHGSKTP 364
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 185 NLELSLYSLVACFSGCVELATW 250
N +L + SL++CFS ++ TW
Sbjct: 1680 NWKLGMVSLISCFSPVLQFPTW 1701
>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 787
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 226 WLRRVSNLEMTAITAPLGSIHAL 294
WL+RV E+T+ T PL ++H +
Sbjct: 583 WLKRVHVPELTSCTIPLKNLHKI 605
>At2g35080.1 68415.m04304 expressed protein ; expression supported
by MPSS
Length = 242
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 243 ANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDR 112
+N + LKQ TN+ K+ S++ + IE + D + D+
Sbjct: 63 SNKEEELKQNTNKMKMWSEYVKKGIEDEQISDCGMVVDDYLEDK 106
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 150 DTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVVLIEETRK 19
DTA ++++ ERD+ M+ +S + + + +V+ EE K
Sbjct: 366 DTAGWLERTERDKGPASLSIMQSRKSLMRAHVIALVLDAEEIIK 409
>At4g30510.2 68417.m04332 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); similar to several hypothetical
proteins
Length = 261
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 47 IYIQYLAKNDLLSFISPFSRASLSRSIFCIYDAVSG 154
+ ++ L +DLL+ + +ASLS C++ +G
Sbjct: 10 VIVEMLYSSDLLAIVGAGEQASLSPRRLCLFKTTTG 45
>At4g03490.1 68417.m00476 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 587
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 325 HFWKMVSLMLSMHGYYLMELLLQSFPSC*LYATT 224
H+W + +L+ G+YLM LLL P Y T
Sbjct: 461 HYWLAI-FVLASGGFYLMALLLLIIPYASPYTFT 493
>At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 314
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 338 VKAQAFLENGLSDVINAWILPNGAVIAVISKLLTLRNH*SKPLMSI 201
+K + LE +V+N++ LP G VI+ L + N S+P+ +
Sbjct: 259 IKILSSLEKFRLEVVNSFTLPFGNSTLVITILTKMDNKFSRPVEEV 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,241,403
Number of Sequences: 28952
Number of extensions: 126011
Number of successful extensions: 361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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