Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0759
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 34 0.061
03_06_0640 + 35230664-35231065,35231957-35232202 30 0.99
01_06_0922 - 33022709-33023545 29 1.3
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 28 4.0
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 28 4.0
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 27 5.3
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 27 5.3
12_02_0883 - 23982022-23982825 27 7.0
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245 27 9.2
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 33.9 bits (74), Expect = 0.061
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = -2
Query: 326 RNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRT 147
RN+ RS + + G PRD PR + RD+ R S RD + R P ++ R+ R
Sbjct: 175 RNERRSRSPRDSRSPRGSPRDSRSPRGSPRDS--RSPKGSPRDTQSPRGSPRDS-RSPRR 231
Query: 146 FRQHLNARKRTP 111
N R R+P
Sbjct: 232 SASPPNGRNRSP 243
>03_06_0640 + 35230664-35231065,35231957-35232202
Length = 215
Score = 29.9 bits (64), Expect = 0.99
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 289 YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFL-IRVRPDASQRRIFSF 441
YS R R+ R ST+ DGI L+T+ K + L +R+ D R SF
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSF 207
>01_06_0922 - 33022709-33023545
Length = 278
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 206 SRDVKRSRTVPTENERTKRTFRQHLN-ARKRTPERKR*ISP 87
SR + S + P E+ R+ R+ + A KRTPE++R SP
Sbjct: 159 SRSARASASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASP 199
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -2
Query: 302 VLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNAR 123
V E Y +R+K ++ D LREK + ++ +T E ++ + +++LN +
Sbjct: 79 VKEEIERYKKDLERMKRQKEDLDIKLREKREEKKVLQADKTAAEEEQKRLKRDKENLNLK 138
Query: 122 KRTPERK 102
T ++
Sbjct: 139 VDTKRKE 145
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 215 CTSSRDVKRSRTV-PTE-NERTKRTFRQHLNARKRTPERKR*ISPFVHSSFAGL 60
CTS V S T P + NE +R ++ L + R+PE+K I P V + F G+
Sbjct: 112 CTSQDKVSPSSTACPHKGNEEGEREVKRQL--KPRSPEKKIPIDPSVKNFFKGM 163
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 278 GLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
G P D + RR+ D + +SS K++R E+ + R H A ER+R
Sbjct: 939 GNPSDAKRSRRSSSD---KPPASSSSSSKKARAAVAEDNDGRHHRRHHREAAAAAEERRR 995
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 224 REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERK 102
REK R ++R R E ER R+H ++R ER+
Sbjct: 527 REKEEEQRKLERDREEELEREREMMRRREHEERKRREKERE 567
>12_02_0883 - 23982022-23982825
Length = 267
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -3
Query: 205 LGTLNVHVPCRRRTNARNE 149
+G+L+VHVP R+RT ARN+
Sbjct: 52 IGSLDVHVPRRKRT-ARNQ 69
>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
Length = 686
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 13 KNFEERVQEYVKPFRGKPAKLE*TNGE 93
K F R++ + RG+PA+ TNGE
Sbjct: 228 KTFSGRLERQLSTLRGRPAQEHMTNGE 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,465,788
Number of Sequences: 37544
Number of extensions: 196327
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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