Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0759
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34898| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.047
SB_36138| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_25175| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 31 0.58
SB_52000| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.8
SB_15035| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014) 29 2.3
SB_41164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 4.1
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_9945| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4) 28 4.1
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0) 28 4.1
SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4) 28 4.1
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 27 5.4
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 27 7.2
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62) 27 9.5
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_34898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 34.3 bits (75), Expect = 0.047
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 1 GKVEKNFEERVQEYVKPFRGKPAKLE*TNGEIH 99
GK EK+FE+RV++YVK +GK L IH
Sbjct: 23 GKDEKHFEKRVKKYVKTLKGKRMGLAMRRARIH 55
>SB_36138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 31.9 bits (69), Expect = 0.25
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 1 GKVEKNFEERVQEYVKPFRGKP 66
GK++ ++RV++YVKP +GKP
Sbjct: 23 GKMKSTLKKRVKKYVKPLKGKP 44
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 31.5 bits (68), Expect = 0.33
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R RQ RKR +RKR
Sbjct: 1076 RQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKR 1132
Score = 31.1 bits (67), Expect = 0.44
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R RQ RKR +RKR
Sbjct: 1034 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKR 1090
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1118 RQRRRKRKRRRKRKRRRKRQRRRKRKRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKR 1174
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1136 RQRRRKRKRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1192
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1154 RQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1210
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1040 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRRRKRKR 1096
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1046 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKR 1102
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1058 RKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1114
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1148 RQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1204
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1160 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1216
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1166 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1222
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R +R R +R +R RQ RKR +RKR
Sbjct: 1112 RKRRRKRQRRRKRKRRRKRKRRRKRQRRRKRKRRRKRQRRRKRQRRRKRKRRRKRKR 1168
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R KR R +R +R R+ RKR +RKR
Sbjct: 1142 RKRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1198
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R +R R +R +R R+ RKR +RKR
Sbjct: 1052 RKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1108
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R +R R +R +R R+ RKR +RKR
Sbjct: 1124 RKRRRKRKRRRKRQRRRKRKRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKR 1180
Score = 27.5 bits (58), Expect = 5.4
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R R + R+ R R K R +R R +R +R R+ RKR +RKR
Sbjct: 1130 RKRRRKRQRRRKRKRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKR 1186
>SB_25175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 30.7 bits (66), Expect = 0.58
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 1 GKVEKNFEERVQEYVKPFRGK 63
GK++ E+RV++YVKP +GK
Sbjct: 23 GKMKSTLEKRVKKYVKPLKGK 43
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = -2
Query: 275 LPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 105
+ RDR + RR RD K + SRD ++SR+ + R++ R+ + ++R+ ER
Sbjct: 293 IERDRHRDRRHSRDR--DRKRSRSRDRRKSRSRSRDRRRSRSRERRRDDRKRRSRER 347
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERK 102
RDR + R RD R+ + SRD +RSR+ + KR R+ + ++R+ ER+
Sbjct: 305 RDRDRKRSRSRDR--RKSRSRSRDRRRSRSRERRRDDRKRRSRER-SPKRRSRERE 357
>SB_52000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 7 VEKNFEERVQEYVKPFRGK 63
++ +FE+RV++YVKP +GK
Sbjct: 1 MKSHFEKRVKKYVKPLKGK 19
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 266 DRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
DR + GR R S +SRT P R++ ++H ++ RTP R R
Sbjct: 42 DRKRGHSRGRRDDRRGGKRRSFSRSKSRTPPRHRRRSRSPNKKHSRSKSRTPPRHR 97
>SB_15035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 1 GKVEKNFEERVQEYVKPFRGK 63
GK++ ++RV++YVKP +GK
Sbjct: 23 GKMKSTLKKRVKKYVKPLKGK 43
>SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014)
Length = 351
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 224 REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 105
R +C +R +KR R + T + T + FR+ L+ ++ ER
Sbjct: 11 RLRCKITRAIKRIRNLTTTDTTTAKRFRKELDQLRKDFER 50
>SB_41164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 239 RDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISPFVHSSF 69
+ L++ K S V ++ +P R R+HL A ERK I P V F
Sbjct: 42 KKGLVKTKRLRSASVGEAQNMPKTTAGQLRPSRRHLKAPSTGKERKAYILPTVQEEF 98
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 224 REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
+ K S RD RSR + ++ R +++ +R R+ ER+R
Sbjct: 291 KHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRR 332
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 27.9 bits (59), Expect = 4.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 302 VLNE*NSYGLPRDRLKPRRTGRDAL--LREKCTSSRDVKRSRTVPTENERTKRTFRQHLN 129
+++E +++ L + LK D L L+ K SRD RSR ER +R+ +
Sbjct: 326 IIHELDNFELDSEGLKEILDKLDGLGRLKRKADRSRDRSRSRESQRSRERVERSQSRSCE 385
Query: 128 ARK--RTPERKR 99
K R ER+R
Sbjct: 386 YHKARRAKERER 397
>SB_9945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 19 FEERVQEYVKPFRGK 63
FE+RV++YVKP +GK
Sbjct: 5 FEKRVKKYVKPLKGK 19
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = -2
Query: 227 LREKCTSSRDVK---RSRTVPTENERTKRT 147
+R K T S+ VK RSR +PTE E+T R+
Sbjct: 421 IRAKETGSQKVKSKIRSRDLPTEKEKTSRS 450
>SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
Length = 118
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 251 RRTGRDALLREKCTSSRDVKRSRTVPTENERT 156
R D +LREK S D+ RT+P N +
Sbjct: 34 RERNSDVILREKRRGSEDLMTGRTIPFANRNS 65
>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
Length = 834
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 11 KRTLKREFKST*NRSGVNLRNSNERTERFIVFSRAYVYVRSDVDGTFVSCVRSPSARY 184
+R ++ S NR V+ + E E I+ + Y YV S+ D PSA +
Sbjct: 724 RRRKRKNLMSRENRLDVSAIINEEEREVLIILCQCYAYVASNPDRRLGKTAPDPSATH 781
>SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
Length = 118
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 251 RRTGRDALLREKCTSSRDVKRSRTVPTENERT 156
R D +LREK S D+ RT+P N +
Sbjct: 34 RERNSDVILREKRRGSEDLMTGRTIPFANRNS 65
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 260 LKPRRTGRDAL--LREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRT 114
L+P T D L L EK TS RD RSR +E H+ R+R+
Sbjct: 200 LEPSPTVLDGLDKLMEKNTSDRDDDRSRPHDPISEHLLYLMMHHMQRRRRS 250
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 248 RTGRDALLREKCTSSRDVKRSRTVPTENERTK-RTFRQHLNARKRT 114
R GR LR CTS+ + SRT+P ENE T+ +R R+RT
Sbjct: 531 RGGRGGRLR--CTSTTPL--SRTLPVENEATQLEDWRPFGGPRQRT 572
>SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 263 RLKPRRTGRD--ALLREKCTSSRDVKRSRTVPTENER 159
RL+P T D ALLRE+ R K+ ++ +EN++
Sbjct: 103 RLEPGETDEDRLALLREEAKMKRQEKKKKSKESENKK 139
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 121 NVRPRENDESLRSFIRVSQVY 59
NVRPRE ++ SFI SQ+Y
Sbjct: 834 NVRPREQLNTVTSFIDGSQIY 854
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -2
Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERK 102
RD + R R RE+ R ++R R E ER +R R+R E +
Sbjct: 590 RDAREKERQDRIRRERERIARERALERERERERERERERRRLEYMREQRRRQEEER 645
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -2
Query: 296 NE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKR 117
+E N Y +P ++ T +++ ++ + S + R RTV + + RT ++ ARK
Sbjct: 317 SEANPY-IPTIHIRDESTSPESVRMQEVSPSSETSR-RTVSGHSAKEDRTSKKRKKARKH 374
Query: 116 TPERK 102
+RK
Sbjct: 375 KRKRK 379
>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 378 NFQRVRD*FNDTVRMRGSERYAVRTCSKRIKLVRSPA 268
N +RD N+T+RMR +E Y +R KR+ SPA
Sbjct: 101 NTLHMRDNENNTLRMRDNENYTLR--MKRLCANCSPA 135
>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
Length = 631
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 344 PSECVDRNDTRSE-RVLNE*NSYGLPRDRLKPRRT 243
P+ ND RS R L + +S+ PRDR PRRT
Sbjct: 434 PTLSRSNNDLRSRYRGLVDKDSHRNPRDRRSPRRT 468
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 26.6 bits (56), Expect = 9.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -2
Query: 212 TSSRDVKRSRT----VPTENERTKRTFRQHLNARKRTPERKR*ISP 87
++SRD KRSR+ P ER K +H +R ++ ERK SP
Sbjct: 259 SNSRDQKRSRSRRSHTPPSEERPKSRLYRH--SRSKSKERKTLKSP 302
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826,601
Number of Sequences: 59808
Number of extensions: 257783
Number of successful extensions: 1056
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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