Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0759
         (450 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   3.8  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   6.6  

>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 351 NDTVRMRGSERYAVRTCSKRIKLVRSPARS 262
           N T+R R S     R+CS++ +  R+  R+
Sbjct: 273 NSTIRSRSSSLSRSRSCSRQAETPRADDRA 302


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 194  KRSRTVPTENERTKRTFRQHLNARK 120
            ++   +PT +E TKR  R++L  ++
Sbjct: 1103 RKGVALPTSSEETKRAKRENLEQKQ 1127


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 194  KRSRTVPTENERTKRTFRQHLNARKRTPERK 102
            +RSR+ P+E +  +R  R+    R R   R+
Sbjct: 1165 RRSRSAPSEADTIRRRMRRREMERLRRTARR 1195


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,566
Number of Sequences: 2352
Number of extensions: 8744
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38268990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)