Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0759
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    32   0.16 
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   1.9  
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    28   2.5  
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    27   4.4  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    27   5.9  
At5g53440.1 68418.m06641 expressed protein                             27   7.7  
At3g29600.1 68416.m03720 hypothetical protein                          27   7.7  

>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = -2

Query: 332 VDRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTK 153
           ++ N + SE  ++E  S+  P D +         +LREK    RD+++ R    EN+  K
Sbjct: 63  MEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKEND--K 120

Query: 152 RTFRQHLNARKRTPERKR 99
              R+H   R R  E+ R
Sbjct: 121 GVEREHEGDRNRAKEKDR 138


>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 545

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 142 RNVRFVRSFSVGTVRERLTSREDV 213
           RNVRF R+ SVG +R+R+  R  +
Sbjct: 261 RNVRFSRTLSVGRLRDRVLRRSSL 284


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 251 RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
           R+   +A  RE+     + +  R    E E T+R  R+   ARKR  ERKR
Sbjct: 447 RKEEEEARKREEAKRREEEEAKRR---EEEETERKKREEEEARKREEERKR 494


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = -2

Query: 341 SECVDRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENE 162
           +E V   DT  ++  +        RDR + R  GRD   R++    RD  R R    + E
Sbjct: 62  TEDVSNGDTNRDKDRDRDRDRDRERDRDRERDRGRD---RDR-DRDRDRDRDRERERDRE 117

Query: 161 RTKRTFRQHLNARKRTPERK 102
           R +R   +  + R R  ER+
Sbjct: 118 RDRRERDREPDRRNREKERE 137


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 286 FYSFRTRSDRVSFRSTHSDGIIKLITH 366
           F+SFRT + ++SF  T S   I L+TH
Sbjct: 93  FHSFRTNTYKLSFMETPSGIKIILVTH 119


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -2

Query: 329 DRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKR 150
           DR+  RS+    + +     RDR + R   RD L  +    SRD  R R+   + E   R
Sbjct: 89  DRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHR 148

Query: 149 TFRQHLNARKRTPERKR 99
             R    +R R+  R R
Sbjct: 149 R-RSRSRSRSRSERRSR 164


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 329 DRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKR 150
           DRN+   ER  +    Y   RDR + R   RD   R++    RD +  R    + +R + 
Sbjct: 314 DRNERDRERTRDRDRDYERDRDRDRDRDRERD---RDR----RDYEHDRYHDRDWDRDRS 366

Query: 149 TFRQHLNARKRTPERKR 99
             R   + R RT +R++
Sbjct: 367 RDRDRDHERDRTHDREK 383


>At3g29600.1 68416.m03720 hypothetical protein
          Length = 164

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 350 MIPSECVDRNDTRSERVLNE*NSYGLPRDRLKPRRTGR--DALLREKCTSSRDVKRSRTV 177
           ++ S+  DR+   S+R   + +S G+ R   +  RT R  D + REKC+     K  RT 
Sbjct: 10  LVGSDRPDRSSDGSDRT--DQSSNGIGRSSHETGRTDRSSDGMDREKCSRKHKDKCIRTH 67

Query: 176 P 174
           P
Sbjct: 68  P 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,671,151
Number of Sequences: 28952
Number of extensions: 163362
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)