Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0758
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q68F69 Cluster: LOC446275 protein; n=4; Xenopus|Rep: LO...    37   0.65 
UniRef50_Q7RKU4 Cluster: Synthetic antigen of P.falciparum, puta...    36   1.1  
UniRef50_Q4RY53 Cluster: Chromosome 3 SCAF14978, whole genome sh...    35   2.6  
UniRef50_A5K8P6 Cluster: Cell cycle control protein, putative; n...    35   2.6  
UniRef50_Q16R52 Cluster: U2 snrnp auxiliary factor, small subuni...    34   4.6  
UniRef50_O01159 Cluster: Probable splicing factor, arginine/seri...    33   6.0  
UniRef50_Q9U213 Cluster: Putative uncharacterized protein rsr-2;...    33   8.0  

>UniRef50_Q68F69 Cluster: LOC446275 protein; n=4; Xenopus|Rep:
           LOC446275 protein - Xenopus laevis (African clawed frog)
          Length = 893

 Score = 36.7 bits (81), Expect = 0.65
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = -2

Query: 326 RNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRD-VKRSRTVPTENERTKR 150
           R+D+ S++  +   S    +++ K R        R+  +SSR+   RSR+  +   R+K 
Sbjct: 215 RSDSSSKKRKHSPKSKRKSKEKKKKRSPSASPKQRDVSSSSREETSRSRS-RSSPPRSKS 273

Query: 149 TFRQHLNARKRTPERKR*ISP 87
              +H +A K +PERKR +SP
Sbjct: 274 DRAKHSSAAKESPERKRSVSP 294


>UniRef50_Q7RKU4 Cluster: Synthetic antigen of P.falciparum,
           putative; n=3; Plasmodium (Vinckeia)|Rep: Synthetic
           antigen of P.falciparum, putative - Plasmodium yoelii
           yoelii
          Length = 486

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 71  NSNERTERFIVFSRAYVYVRSDVDGTFVSCVRS 169
           +SNE  E F +F RA+  + +DVD  F  C  S
Sbjct: 301 DSNENVEDFFIFDRAFSNISNDVDSMFTECANS 333


>UniRef50_Q4RY53 Cluster: Chromosome 3 SCAF14978, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 3 SCAF14978, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 933

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 29/81 (35%), Positives = 37/81 (45%)
 Frame = -2

Query: 341 SECVDRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENE 162
           SE +   DTR ER   E       RDR   R  GR+     +   SRD K SR    E+ 
Sbjct: 281 SELLSSRDTRGERDTRE------SRDRRDARERGRETTRDSR--DSRDAKDSR----ESR 328

Query: 161 RTKRTFRQHLNARKRTPERKR 99
              R+ R+ L +R+R  ER R
Sbjct: 329 TDTRSSRESLGSRERERERDR 349


>UniRef50_A5K8P6 Cluster: Cell cycle control protein, putative; n=5;
           Plasmodium|Rep: Cell cycle control protein, putative -
           Plasmodium vivax
          Length = 1144

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = -2

Query: 266 DRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 87
           DR K  RT R A+ + + +S    +  R + T   +TKR  R+ +  +K++P R      
Sbjct: 41  DRSKGERTKRKAV-KSRSSSDESEEGERKIATSLNKTKRDKRRRITQKKKSPHRLE--EH 97

Query: 86  FVHSSFAGLPLNG 48
           +  SS A  P  G
Sbjct: 98  YTSSSDASSPRRG 110


>UniRef50_Q16R52 Cluster: U2 snrnp auxiliary factor, small subunit;
           n=2; Aedes aegypti|Rep: U2 snrnp auxiliary factor, small
           subunit - Aedes aegypti (Yellowfever mosquito)
          Length = 509

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -2

Query: 278 GLPRDRLKPRRTGRDALLREKCTS-SRDVKRSRTVPTENERTKRTFRQHLNARKRTPERK 102
           GL ++R + R +   +  R   +  SR   RSR    E +R +   ++H  +R R+PERK
Sbjct: 420 GLRKNRSRSRESADSSRNRSSSSRRSRSRNRSRHRSRERDRREEKQKRHSRSRSRSPERK 479

Query: 101 R 99
           +
Sbjct: 480 K 480


>UniRef50_O01159 Cluster: Probable splicing factor,
           arginine/serine-rich 7; n=3; Caenorhabditis|Rep:
           Probable splicing factor, arginine/serine-rich 7 -
           Caenorhabditis elegans
          Length = 452

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = -2

Query: 329 DRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKR 150
           DR+  RS    +        RDR + R   R    R +    RD KRSR+      R+K 
Sbjct: 300 DRDRRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRS-RDRRRRSKS 358

Query: 149 TFRQHLNARKRTPERKR 99
             R+   +R R+ +RKR
Sbjct: 359 RDRKRERSRSRSKDRKR 375


>UniRef50_Q9U213 Cluster: Putative uncharacterized protein rsr-2;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein rsr-2 - Caenorhabditis elegans
          Length = 425

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 269 RDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
           +D+ KPR   R ++ R+     R+ +R R    E+ R +R   +    R+R+PER+R
Sbjct: 262 KDQRKPREDRRRSVERQ---DQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRR 315


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,908,737
Number of Sequences: 1657284
Number of extensions: 12250712
Number of successful extensions: 28401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28330
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)