Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0758
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   1.3  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   6.9  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -2

Query: 329 DRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKR 150
           D +D R  R   E  SY   R+  +PRR  R      +      V RSR+ P   ER+ R
Sbjct: 55  DESDFRRHRESRE-RSY---REDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERSVR 110

Query: 149 TFRQHL-NARKRTP 111
           +  Q L   R  TP
Sbjct: 111 SIEQELEQLRDVTP 124


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 168 ERTHETNVPSTSERT*TYAREKTMNLSVR 82
           ER  E+++P+ +++   Y ++KT NLS++
Sbjct: 470 ERIIESDLPNNNKQKDRYFKDKTSNLSMK 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,263
Number of Sequences: 5004
Number of extensions: 52775
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)