Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0758
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    34   0.14 
03_06_0640 + 35230664-35231065,35231957-35232202                       30   2.4  
01_06_0922 - 33022709-33023545                                         29   3.1  
04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580...    29   5.4  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    28   9.5  
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340...    28   9.5  
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941...    28   9.5  

>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = -2

Query: 326 RNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRT 147
           RN+ RS    +  +  G PRD   PR + RD+  R    S RD +  R  P ++ R+ R 
Sbjct: 175 RNERRSRSPRDSRSPRGSPRDSRSPRGSPRDS--RSPKGSPRDTQSPRGSPRDS-RSPRR 231

Query: 146 FRQHLNARKRTP 111
                N R R+P
Sbjct: 232 SASPPNGRNRSP 243


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 289 YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFL-IRVRPDASQRRIFSF 441
           YS R R+ R    ST+ DGI  L+T+  K    + L +R+  D    R  SF
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSF 207


>01_06_0922 - 33022709-33023545
          Length = 278

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 206 SRDVKRSRTVPTENERTKRTFRQHLN-ARKRTPERKR*ISP 87
           SR  + S + P   E+  R+ R+  + A KRTPE++R  SP
Sbjct: 159 SRSARASASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASP 199


>04_03_1043 -
           21957041-21957256,21957347-21957517,21957979-21958019,
           21958465-21958525,21959191-21960075
          Length = 457

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 482 AAVQSRTSAVCLNVCDDTVSGTRRTRLVTRTKESSMCASH 601
           A +++RTS +CL   D      ++ +L+    +S +C  H
Sbjct: 395 AEMETRTSGLCLQSQDQVTFHCQKLKLIEIKHDSELCCDH 434


>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 769 HLSQSAPSFTDWKRDASGVRKSRT*LDNFILPERTS 662
           +LS+  PS   WK++ +  RKSRT  +  I+ +  S
Sbjct: 658 NLSECLPSVDLWKKNWTAYRKSRTEKEQLIMKKEKS 693


>04_01_0256 +
           3402982-3402984,3403077-3403158,3403307-3403449,
           3403557-3403832,3404136-3404315
          Length = 227

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = -2

Query: 302 VLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNAR 123
           V  E   Y    +R+K ++   D  LREK    + ++  +T   E ++  +  +++LN +
Sbjct: 79  VKEEIERYKKDLERMKRQKEDLDIKLREKREEKKVLQADKTAAEEEQKRLKRDKENLNLK 138

Query: 122 KRTPERK 102
             T  ++
Sbjct: 139 VDTKRKE 145


>01_04_0068 +
           15693131-15693533,15693604-15693803,15693879-15694162,
           15694251-15694428
          Length = 354

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 215 CTSSRDVKRSRTV-PTE-NERTKRTFRQHLNARKRTPERKR*ISPFVHSSFAGL 60
           CTS   V  S T  P + NE  +R  ++ L  + R+PE+K  I P V + F G+
Sbjct: 112 CTSQDKVSPSSTACPHKGNEEGEREVKRQL--KPRSPEKKIPIDPSVKNFFKGM 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,237
Number of Sequences: 37544
Number of extensions: 331414
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)