Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0758
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.37
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar... 29 3.4
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar... 29 3.4
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing... 29 3.4
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa... 29 4.5
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 29 4.5
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 29 4.5
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 28 6.0
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 332 VDRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENERTK 153
++ N + SE ++E S+ P D + +LREK RD+++ R EN+ K
Sbjct: 63 MEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKEND--K 120
Query: 152 RTFRQHLNARKRTPERKR 99
R+H R R E+ R
Sbjct: 121 GVEREHEGDRNRAKEKDR 138
>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 380 LKKIFSYASGPTQVNVVFSRFLP*CGRECDASVVAAVQSRTSAVCLNVCDDTVSGTRRTR 559
++ I + +G Q +VV F P C EC +S S C DD +S TRR
Sbjct: 83 IESIGEHVNGFQQGDVVLPVFHPHC-EEC-----RDCKSSKSNWCARFADDFLSNTRRYG 136
Query: 560 LVTRTKES 583
+ +R K+S
Sbjct: 137 MTSRFKDS 144
>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 380 LKKIFSYASGPTQVNVVFSRFLP*CGRECDASVVAAVQSRTSAVCLNVCDDTVSGTRRTR 559
++ I + +G Q +VV F P C EC +S S C DD +S TRR
Sbjct: 83 IESIGEHVNGFQQGDVVLPVFHPHC-EEC-----RDCKSSKSNWCARFADDFLSNTRRYG 136
Query: 560 LVTRTKES 583
+ +R K+S
Sbjct: 137 MTSRFKDS 144
>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein weak
similarity to SP|Q09717 Ran-specific GTPase-activating
protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
protein) {Schizosaccharomyces pombe}; contains Pfam
profile PF00638: RanBP1 domain
Length = 440
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 452 CGRECDASVVAAVQSRTSAVCLNVCDDTVSGTRRT 556
CG+ D V A ++ + NVC++ V GT +T
Sbjct: 148 CGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQT 182
>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 545
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 142 RNVRFVRSFSVGTVRERLTSREDV 213
RNVRF R+ SVG +R+R+ R +
Sbjct: 261 RNVRFSRTLSVGRLRDRVLRRSSL 284
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -3
Query: 562 KTGPASARNCIIADVQTNRTSPRLHGCDNRRVALASALRQETRKYDVDLR-RAGR 401
KTG S NC A P RR + S LR D DLR R GR
Sbjct: 17 KTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLRDRLGR 71
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 251 RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 99
R+ +A RE+ + + R E E T+R R+ ARKR ERKR
Sbjct: 447 RKEEEEARKREEAKRREEEEAKRR---EEEETERKKREEEEARKREEERKR 494
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -2
Query: 341 SECVDRNDTRSERVLNE*NSYGLPRDRLKPRRTGRDALLREKCTSSRDVKRSRTVPTENE 162
+E V DT ++ + RDR + R GRD R++ RD R R + E
Sbjct: 62 TEDVSNGDTNRDKDRDRDRDRDRERDRDRERDRGRD---RDR-DRDRDRDRDRERERDRE 117
Query: 161 RTKRTFRQHLNARKRTPERK 102
R +R + + R R ER+
Sbjct: 118 RDRRERDREPDRRNREKERE 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423,338
Number of Sequences: 28952
Number of extensions: 270783
Number of successful extensions: 689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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