Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0706
         (407 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   0.87 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   0.87 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   4.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   4.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   8.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.1  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 113 LPLKDISIFSYTECPENY 60
           LP + + +F+  ECP NY
Sbjct: 496 LPGETLRLFTCMECPNNY 513


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 113 LPLKDISIFSYTECPENY 60
           LP + + +F+  ECP NY
Sbjct: 503 LPGETLRLFTCMECPNNY 520


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 122 SLPVPGKVSAEELRLNCGVQV 184
           S P P + + EEL   CG+ V
Sbjct: 254 SNPYPSEEAKEELARKCGITV 274


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 195 NYICTCTPQF 166
           +YICTC P F
Sbjct: 44  SYICTCKPGF 53


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 VNNAAVAVCEPFLDCSPINFDKTFDV 407
           V + +V+V  P++  SP+   + FDV
Sbjct: 708 VASPSVSVASPYMLQSPLTPHEAFDV 733


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 VNNAAVAVCEPFLDCSPINFDKTFDV 407
           V + +V+V  P++  SP+   + FDV
Sbjct: 600 VASPSVSVASPYMLQSPLTPHEAFDV 625


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 378 ANSPKMVHIQQQLRC 334
           A   K++H+ Q+ RC
Sbjct: 268 AEKRKLIHLLQEYRC 282


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 165 NRNSSADTLPGTGNEN 118
           N  SS DT+   GNEN
Sbjct: 17  NSCSSDDTVLSVGNEN 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,136
Number of Sequences: 336
Number of extensions: 1457
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)