Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0706
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    30   0.16 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   2.0  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   2.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   6.0  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   7.9  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 261 DVDIGDWEKT--RKVVXSLGHFDALVNNAAVAVCEPFLDCSPINFD 392
           DV   D  +T   KV+ +LG  D L+NNA +A   PF   S  ++D
Sbjct: 53  DVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWD 98


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 IVDVDIGDWEKTRKVVXSLGHFDALVNNAAVAVCE 359
           ++ VDI D   T + + ++GH   L N  AV  C+
Sbjct: 586 VIPVDICDIRLTFQSMSAMGHLTFLDNRIAVVSCD 620


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPSI 252
           KG   +VT            +L  +G N+V +SRT+  L++L  E  ++
Sbjct: 56  KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELETV 104


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 177 TPQFNRNSSADTLPGTGNENSFAFKRYF 94
           TP+ N  SS+ T   TG  N+F F +YF
Sbjct: 678 TPE-NELSSSLTHQNTGEWNAFIFVKYF 704


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 351 VCEPFLDCSPINFDKTFDV 407
           VC P  +  P N+D+ FDV
Sbjct: 589 VCPPACNTPPPNYDELFDV 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,261
Number of Sequences: 5004
Number of extensions: 25192
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)