Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0706
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0105 - 22812730-22813066,22813406-22813565,22814613-22814820     34   0.050
08_01_0296 + 2383578-2384220,2384754-2384829,2384942-2385057,238...    27   7.6  

>04_04_0105 - 22812730-22813066,22813406-22813565,22814613-22814820
          Length = 234

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 243 PLYRIVDVDIGDWEKTRKVVXS----LGHFDALVNNAAVAVCEPFLDCSPINFDKTFD 404
           P Y ++++D+   E  R  V      LG  D LVNNA V +  P  +     F + FD
Sbjct: 8   PRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEFQQVFD 65


>08_01_0296 +
           2383578-2384220,2384754-2384829,2384942-2385057,
           2385957-2386522
          Length = 466

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 302 NNLPRLLPISYINVYNSIEGY 240
           +NLPR L + Y+N  +S EGY
Sbjct: 298 DNLPRTLLMYYVNFISSPEGY 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,770,799
Number of Sequences: 37544
Number of extensions: 140680
Number of successful extensions: 290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)