Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0706
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7777| Best HMM Match : adh_short (HMM E-Value=0.083)                47   7e-06
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)              34   0.052
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             29   1.1  
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_53673| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_54002| Best HMM Match : POP1 (HMM E-Value=0)                        27   5.9  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 27   7.8  
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             27   7.8  

>SB_7777| Best HMM Match : adh_short (HMM E-Value=0.083)
          Length = 133

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +3

Query: 240 IPLYRIVDVDIGDWEKTRKVVXSLGHFDALVNNAAVAVCEPFLDCSPINFDK 395
           +P  + V  D+ D EK +K++ S   FD LVNNA  A+ E FL+  P +FD+
Sbjct: 1   VPSIQAVCDDVADIEKMQKLIESQETFDLLVNNAGFAIFESFLEIKPESFDR 52


>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
          Length = 289

 Score = 33.9 bits (74), Expect = 0.052
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 255 IVDVDIGDWEK----TRKVVXSLGHFDALVNNAAVAVCEPFLDCSPINFDKTFDV 407
           IV +D+G+  +      K++  LG  D LVNNA      PFLD +   + K F V
Sbjct: 92  IVQLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTV 146


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 312 GHFDALVNNAAVAVCEPFLDCSPINFDKTFDV 407
           G+   L+NNA V   + FL+CS  +  +TF V
Sbjct: 111 GNVTILINNAGVVTGKKFLNCSESDVMRTFQV 142


>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 264 VDIGDWEKTRKVVXSLGHFDALVNNAAVAVCEPFLDCSPINFDKTFDV 407
           VD+ D+E  +K    +   D L N A + +     +CS   +D T D+
Sbjct: 67  VDVTDYEAIKKFASEVDRVDVLFNCAGLVLGGNIEECSEKQWDLTMDL 114


>SB_53673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -2

Query: 118 FFCL*KIFPFLVILNVLKIIAVDTDYRLQ*YSN 20
           F C   IF   V+ N+L IIAV T+ RLQ  SN
Sbjct: 13  FLCC--IFTVAVVGNLLIIIAVSTNRRLQTVSN 43


>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
          Length = 886

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 1   LSDVSYYCCTTV 36
           L D+SYYCCT V
Sbjct: 180 LQDISYYCCTEV 191


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 401 KRFVKVDRRTVQKWFTYSNSCVVHQRIKV 315
           ++F+K+ + +V  WFT  ++ V   R+K+
Sbjct: 307 QKFLKLSKESVDDWFTQQSTTVEGARLKL 335


>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 401  KRFVKVDRRTVQKWFTYSNSCVVHQRIKV 315
            ++F+K+ + +V  WFT  ++ V   R+K+
Sbjct: 1344 QKFLKLSKESVDDWFTQQSTTVEGARLKL 1372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,749,338
Number of Sequences: 59808
Number of extensions: 184257
Number of successful extensions: 384
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)