Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0706
(407 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65205.1 68418.m08201 short-chain dehydrogenase/reductase (SD... 29 1.6
At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SD... 28 2.8
At2g29510.1 68415.m03584 expressed protein 28 2.8
At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SD... 28 2.8
At1g49790.1 68414.m05583 F-box family protein-related contains w... 28 2.8
At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SD... 27 3.7
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD... 27 3.7
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD... 27 3.7
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina... 27 6.4
At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SD... 26 8.5
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD... 26 8.5
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD... 26 8.5
>At5g65205.1 68418.m08201 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 285
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 294 KVVXSLGHFDALVNNAAVAVCEPFLDCSPINFDKTFD 404
KV+ G D LVNNA V P + D TF+
Sbjct: 74 KVIDKFGQIDVLVNNAGVQCIGPLAEIPISAMDYTFN 110
>At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 288
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG I+A++R L SL SE S
Sbjct: 27 KDKVVLVTGASSGIGREICLDLGKAGCKIIAVARRVDRLNSLCSEINS 74
>At2g29510.1 68415.m03584 expressed protein
Length = 839
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 370 SKNGSHTATAALFTNASK*PKXSTTFLVFSQSPISTSTIL*RGI-HSEDFLSANEFVTMQ 194
S+NG + ALF SK + TF V + I+ +TI + + ED+ F T+Q
Sbjct: 513 SRNGKSSTVQALFRVTSKNDQPLFTFAVEKEQSITAATIRKQTLPEKEDYGHKYTFFTVQ 572
>At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 312
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 85 LKMEISFKGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPSIE 255
L + K K +LVT +L +AG I+A +R L+SL SE E
Sbjct: 41 LYLTCELKDKVVLVTGASSGIGREVCLDLAKAGCKIIAAARRVDRLKSLCSEINRFE 97
>At1g49790.1 68414.m05583 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain
Length = 283
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 RIVDVDIGDWEKTRKVVXSLGHFD-ALVNNAAVAVCEPFLDCSPINFD 392
+I+DV+IG+W K R+ +G+ + + N ++ + + C + FD
Sbjct: 132 QILDVNIGEWRKQRQPPYFVGYREKSACVNGSIYWSQALIRCKLLAFD 179
>At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 287
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG IVA +R L SL SE S
Sbjct: 23 KDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINS 70
>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 276
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG IVA +R L SL SE S
Sbjct: 14 KDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINS 61
>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 277
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG IVA +R L SL SE S
Sbjct: 15 KDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINS 62
>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1456
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 259 TIL*RGIHSEDFLSANEFVTMQLYLHLHATIQSQFL 152
TIL +G HSE E V L H +++ FL
Sbjct: 390 TILLKGCHSERLKKVKEVVQYSFILAYHLMLEASFL 425
>At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 298
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG ++A +R L SL SE S
Sbjct: 37 KDKVVLVTGASSGIGREICLDLAKAGCQVIAAARRVDRLNSLCSEINS 84
>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 279
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG ++A +R L SL SE S
Sbjct: 18 KDKVVLVTGASSGIGREICLDLAKAGCQVIAAARRVDRLNSLCSEINS 65
>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 280
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 106 KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPS 249
K K +LVT +L +AG ++A +R L SL SE S
Sbjct: 19 KDKVVLVTGASSGIGREICLDLAKAGCQVIAAARRVDRLNSLCSEINS 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,385,377
Number of Sequences: 28952
Number of extensions: 121977
Number of successful extensions: 253
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -