Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0701
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    29   3.4  
04_04_0903 - 29269794-29270141,29270227-29270751                       28   6.0  

>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +1

Query: 487 RLNNRLTILRACSRVS---NYWKLYTCKFQLYSSTHKIYFRLADDFNL 621
           R  N L IL ACS +    N +K    +F      HK  +   DD NL
Sbjct: 701 RHRNLLPILTACSSIDSEGNDFKALVYEFMSQGDLHKFLYTTRDDINL 748


>04_04_0903 - 29269794-29270141,29270227-29270751
          Length = 290

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 81  HGRNRRDGITYPCGL 125
           HGR+RR G+TYP  L
Sbjct: 54  HGRHRRTGVTYPVSL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,256
Number of Sequences: 37544
Number of extensions: 321618
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)