Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0701
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_33187| Best HMM Match : rve (HMM E-Value=1.1)                       29   4.6  
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_47104| Best HMM Match : Lambda_Kil (HMM E-Value=4.4)                28   8.0  

>SB_54931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 280 RTSCPLGHDDFQNCFCPYTPFYGTYTLNN 366
           R   PL  DD Q C   Y PF    TL N
Sbjct: 145 RQGWPLAKDDLQVCLMDYFPFRDELTLQN 173


>SB_33187| Best HMM Match : rve (HMM E-Value=1.1)
          Length = 268

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 280 RTSCPLGHDDFQNCFCPYTPFYGTYTLNN 366
           R   PL  DD Q C   Y PF    TL N
Sbjct: 145 RQGWPLAKDDLQVCLMDYFPFRDELTLQN 173


>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 331 RDKNNFGSRRGLKDKMSGAFVSSDAPCSIP 242
           R K +FGS +  +  M+G+F+SSD P   P
Sbjct: 184 RAKGSFGSSKDYELYMTGSFLSSDNPNENP 213


>SB_47104| Best HMM Match : Lambda_Kil (HMM E-Value=4.4)
          Length = 224

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 280 RTSCPLGHDDFQNCFCPYTPFYGTYTLNN 366
           R   PL  DD Q C   Y PF    TL N
Sbjct: 33  RQGWPLAKDDLQVCLRDYFPFRDELTLQN 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,675,134
Number of Sequences: 59808
Number of extensions: 403669
Number of successful extensions: 3931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3931
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)