Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0701
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 111  YPCGLTRDPNTSFIFIT-RCYSFTVDVNREHLLSMYFIRKIDTLCGIEHGASLDTNAPDI 287
            Y C LT D    + F+  RC S   DV    L+++  +RK+     + H       AP  
Sbjct: 1215 YECELTEDQKEIYRFVVDRCTSSQEDVGLSSLVTLITLRKLTDHTKLVHDTLAKIGAPQY 1274

Query: 288  L 290
            +
Sbjct: 1275 I 1275


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 111  YPCGLTRDPNTSFIFIT-RCYSFTVDVNREHLLSMYFIRKIDTLCGIEHGASLDTNAPDI 287
            Y C LT D    + F+  RC S   DV    L+++  +RK+     + H       AP  
Sbjct: 1215 YECELTEDQKEIYRFVVDRCTSSQEDVGLSSLVTLITLRKLTDHTKLVHDTLAKIGAPQY 1274

Query: 288  L 290
            +
Sbjct: 1275 I 1275


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
            protein Y48G10A.4 protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 180  VDVNREHLLSMYFIRKIDTLCGIEHGASLDTNAPDILSFRP--RRLPKLFLSLHPILRYL 353
            +++  +H  SM   + +DTL    +  S + N P +L+ +   RR  K   +L  I   L
Sbjct: 904  IELLSQHYHSMMMTKSLDTLYTGANSLSANKNVPQVLATQEINRRTTKFLTALSSIYFGL 963

Query: 354  H 356
            H
Sbjct: 964  H 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,772,135
Number of Sequences: 27780
Number of extensions: 305928
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)