Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0701
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41480.1 68415.m05124 peroxidase, putative similar to peroxid...    28   6.5  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    27   8.6  

>At2g41480.1 68415.m05124 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781334|emb|CAA71494
          Length = 328

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 84  GRNRRDGITYPCGLTRDPNTSFIFITRCYSFTVDVNREHLLSMYFIRKIDTLC 242
           G +  D +T     T        F  R Y+FTV  N +  +S  F+ ++ TLC
Sbjct: 178 GLDTHDLVTLLGAHTIGQTDCLFFRYRLYNFTVTGNSDPTISPSFLTQLKTLC 230


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 208 VCISLEKLIPSAGLNTVHR-SIRMHRTSCPLGHDDFQNCFCPYTPFYGTYTLNNWDLVVP 384
           +C S     P+    T H  ++R +        + F +   PY P + +Y L+N  +   
Sbjct: 77  LCFSTRTTYPNRNRTTFHWFTLRRNDNKMNTTENVFVSIDVPYRPGHASYPLSNIAIDTE 136

Query: 385 RICISGGKF 411
             CI G  F
Sbjct: 137 IYCIPGYNF 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,627,835
Number of Sequences: 28952
Number of extensions: 272393
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)