Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0599
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9AVH2 Cluster: Putative senescence-associated protein;...    81   1e-14
UniRef50_Q6QI74 Cluster: LRRG00134; n=6; Euteleostomi|Rep: LRRG0...    45   0.001
UniRef50_A4VF70 Cluster: Putative uncharacterized protein; n=1; ...    39   0.057
UniRef50_Q4YZY1 Cluster: Putative uncharacterized protein; n=4; ...    38   0.099
UniRef50_Q3BKH8 Cluster: Putative uncharacterized protein; n=4; ...    34   1.6  
UniRef50_Q0V2H3 Cluster: Putative uncharacterized protein; n=1; ...    34   1.6  
UniRef50_O77086 Cluster: Guanine nucleotide-releasing factor 2; ...    33   2.8  
UniRef50_Q29IL8 Cluster: GA16131-PA; n=1; Drosophila pseudoobscu...    33   3.7  
UniRef50_A7RI48 Cluster: Predicted protein; n=1; Nematostella ve...    33   3.7  
UniRef50_UPI0000E246BE Cluster: PREDICTED: hypothetical protein;...    33   4.9  
UniRef50_Q82K49 Cluster: Putative uncharacterized protein; n=2; ...    33   4.9  
UniRef50_UPI0000EBC3AF Cluster: PREDICTED: hypothetical protein;...    32   6.5  
UniRef50_Q2LUB9 Cluster: Hypothetical membrane protein; n=1; Syn...    32   6.5  
UniRef50_A5GPY7 Cluster: Bacterial UmuC protein homolog; n=15; C...    32   8.6  
UniRef50_Q7F7E2 Cluster: OSJNBa0036E02.9 protein; n=5; Oryza sat...    32   8.6  
UniRef50_Q9VD20 Cluster: CG31169-PA, isoform A; n=5; Schizophora...    32   8.6  
UniRef50_A2FCR4 Cluster: Adaptin N terminal region family protei...    32   8.6  
UniRef50_Q6L6Z3 Cluster: RRNA intron-encoded endonuclease; n=7; ...    32   8.6  

>UniRef50_Q9AVH2 Cluster: Putative senescence-associated protein;
           n=4; Eukaryota|Rep: Putative senescence-associated
           protein - Pisum sativum (Garden pea)
          Length = 282

 Score = 81.0 bits (191), Expect = 1e-14
 Identities = 34/40 (85%), Positives = 36/40 (90%)
 Frame = +2

Query: 368 HQ*GKTNLSHDGLSPAHVPF*WVNNPTLGEFCFAMIGRAE 487
           HQ GKTNLSHDGL PAHVP+ WVNNPTLGEFCF MIGRA+
Sbjct: 57  HQWGKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRAD 96


>UniRef50_Q6QI74 Cluster: LRRG00134; n=6; Euteleostomi|Rep:
           LRRG00134 - Rattus norvegicus (Rat)
          Length = 221

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 431 WVNNPTLGEFCFAMIGRAE 487
           WVNNPTLGEFCF MIGRA+
Sbjct: 25  WVNNPTLGEFCFTMIGRAD 43


>UniRef50_A4VF70 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 116

 Score = 39.1 bits (87), Expect = 0.057
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = -2

Query: 486 SALPIIAKQNSPSVGLFTHQKGT 418
           SALPII KQNS  VGLFT Q+GT
Sbjct: 94  SALPIIVKQNSQRVGLFTRQQGT 116


>UniRef50_Q4YZY1 Cluster: Putative uncharacterized protein; n=4;
           Eukaryota|Rep: Putative uncharacterized protein -
           Plasmodium berghei
          Length = 54

 Score = 38.3 bits (85), Expect = 0.099
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -3

Query: 443 DCSPIKRERELGLDRRET 390
           DCSP  RERELGLDRRET
Sbjct: 6   DCSPANRERELGLDRRET 23


>UniRef50_Q3BKH8 Cluster: Putative uncharacterized protein; n=4;
           Bacteria|Rep: Putative uncharacterized protein -
           Magnetospirillum gryphiswaldense
          Length = 76

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = -3

Query: 485 RLFLSLRSKIRQALDCSPIKRERELGLDRRET 390
           RL  S      Q   CSPIK  RELGL+RRET
Sbjct: 6   RLITSWGWSRSQGFGCSPIKVVRELGLERRET 37


>UniRef50_Q0V2H3 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 705

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +2

Query: 197 VSISLPDSARLASALE-AFRLIPRMVASHHRPLGECMNQMSETAVPLVLSSITIATTSHQ 373
           V +  PD   L   LE A +LIP MV      +G     M    V LVL+ +++   ++ 
Sbjct: 206 VFVISPDGQYLVRVLENAHKLIPYMVIKQTLRVGNAAT-MINGMVRLVLAKLSVTAMTNW 264

Query: 374 *GKTNLSHDGLS 409
            G TN S+DG++
Sbjct: 265 IGLTNNSNDGMN 276


>UniRef50_O77086 Cluster: Guanine nucleotide-releasing factor 2;
           n=7; melanogaster subgroup|Rep: Guanine
           nucleotide-releasing factor 2 - Drosophila melanogaster
           (Fruit fly)
          Length = 1571

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -2

Query: 273 ATIRGISLNAS---KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPF 103
           A    ISLN+     +  SL   G D L+V  R    + QC F S ++HS+ E  ++   
Sbjct: 584 AQSHNISLNSDLDCSSNISLLNYGVDRLSVRSRSPDENSQCSFDSALNHSREEEDQQQQH 643

Query: 102 GSRRS 88
              RS
Sbjct: 644 QHLRS 648


>UniRef50_Q29IL8 Cluster: GA16131-PA; n=1; Drosophila
           pseudoobscura|Rep: GA16131-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 1196

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 273 ATIRGISLNAS---KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRE 124
           A    ISLN+     +  SL   G D L+V  R    + QC F S ++HS+ E
Sbjct: 395 AQSHNISLNSDLDCSSNISLLNYGVDRLSVRSRSPDENSQCSFDSALNHSREE 447


>UniRef50_A7RI48 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 746

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -2

Query: 354 IVILLSTRGTAVSDIWFMH 298
           +VILLSTRGTA SD W +H
Sbjct: 660 VVILLSTRGTADSDNWHLH 678


>UniRef50_UPI0000E246BE Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 308

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 296 RRAAGGAKLPSAGLA*TPLRPKPA*PNPAR-ICSLWSPES 180
           RR  GGA+ P A L  TP RP P  P P R IC+   PE+
Sbjct: 18  RRGRGGAQRPRAYLPQTP-RPDPPEPRPRRPICTPRPPEA 56


>UniRef50_Q82K49 Cluster: Putative uncharacterized protein; n=2;
           Streptomyces|Rep: Putative uncharacterized protein -
           Streptomyces avermitilis
          Length = 232

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +2

Query: 38  PDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPD 217
           P +R+  +R      ++  R P G RRR          +   C E PDS  +  S S  D
Sbjct: 32  PSVRTSPSRTSAVPFTLPPRIPPGPRRRSLLASAAGAALLVGCSESPDSANTAGSPSAAD 91

Query: 218 SARLASALEAFRLIPRMVA--SHHRPLGECMNQMSETAV 328
            AR  +A ++  L  R  A  + H  L + +  +  TAV
Sbjct: 92  RARARAARDSAALATRYAAVIAAHPALADLLRPL-RTAV 129


>UniRef50_UPI0000EBC3AF Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 285

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 284 GGAKLPSAGLA*TPLRPKPA*PNP 213
           GG   P  GLA TPL+PKP  P+P
Sbjct: 4   GGKPAPPLGLAPTPLQPKPRKPDP 27


>UniRef50_Q2LUB9 Cluster: Hypothetical membrane protein; n=1;
           Syntrophus aciditrophicus SB|Rep: Hypothetical membrane
           protein - Syntrophus aciditrophicus (strain SB)
          Length = 90

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 101 PNGLRRRVSRFECETRLVKS--HCLEPPDSRGSTV 199
           P+ ++R V  + CE+R+ +S  HCL  P SRG+ +
Sbjct: 31  PSYIKRGVPAYRCESRVGQSNFHCLNIPSSRGTEI 65


>UniRef50_A5GPY7 Cluster: Bacterial UmuC protein homolog; n=15;
           Cyanobacteria|Rep: Bacterial UmuC protein homolog -
           Synechococcus sp. (strain RCC307)
          Length = 426

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = -2

Query: 324 AVSDIWFMHSPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSR 145
           AV D+W +     RWC       +L+ ++A+++L   G  ++ +  ++      C     
Sbjct: 181 AVEDLWGVGRRLARWCRLRGLATALDLAQADSALIRQGWGVVGLRLQQELRGISCLALES 240

Query: 144 VSHSKRETRRRSPFG-------SRRSMLSVFFLTRASRLRRSG 37
              +K+ET     FG       S R  ++   +  A +LRR G
Sbjct: 241 EPAAKQETCVSRSFGTAVLDRLSLREAVAAHVVRGAEKLRRQG 283


>UniRef50_Q7F7E2 Cluster: OSJNBa0036E02.9 protein; n=5; Oryza
           sativa|Rep: OSJNBa0036E02.9 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 498

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 128 RFECETRLVKSH---CLEPPDSRGSTVSISLPDSARLASALEAFRLIPRM 268
           R  C  R +K H   C  PP  R +  S++LP  +RL     A R++ R+
Sbjct: 425 RLRCRLRCIKLHPGGCFAPPTHRLNAFSLALPSHSRLWLPSAAPRILSRI 474


>UniRef50_Q9VD20 Cluster: CG31169-PA, isoform A; n=5; Schizophora|Rep:
            CG31169-PA, isoform A - Drosophila melanogaster (Fruit
            fly)
          Length = 1469

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -2

Query: 243  SKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRR 91
            SK EA +    KD+   EP ES  SK+   TS  S SK+E++R+     RR
Sbjct: 1218 SKTEAVIEPVAKDVSMAEPNESLHSKK--ETSPASLSKQESKRKQKRSLRR 1266


>UniRef50_A2FCR4 Cluster: Adaptin N terminal region family protein;
           n=1; Trichomonas vaginalis G3|Rep: Adaptin N terminal
           region family protein - Trichomonas vaginalis G3
          Length = 889

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +2

Query: 227 LASALEAFRLIPRMVASHHRPLGECMNQMSE----TAVPLVLSSITIATTSHQ*GK 382
           L   ++  RL PR++  H   +GEC+N   +    TA+ L+ S  T  T  +  G+
Sbjct: 307 LQQFMKLIRLNPRLITDHREIIGECINHDDDSIRLTAIDLISSLATAKTLDNVVGR 362


>UniRef50_Q6L6Z3 Cluster: RRNA intron-encoded endonuclease; n=7;
           Archaea|Rep: RRNA intron-encoded endonuclease -
           Thermoproteus sp. IC-062
          Length = 272

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 481 SSYHCEAKFAKRWIVHPSKGNVSWA*TVVRQVSFTL 374
           SS+   A  AK  +  P KGNV W  TV RQV   L
Sbjct: 231 SSHPGGAAAAKGGVARPLKGNVRWVQTVARQVGLYL 266


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,611,738
Number of Sequences: 1657284
Number of extensions: 9950876
Number of successful extensions: 28442
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 27652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28429
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)