Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0599
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.70
07_03_0846 - 21983581-21986055 29 1.6
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 28 3.7
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 28 3.7
06_01_1170 - 10002650-10004122 28 5.0
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 5.0
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 27 6.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 6.5
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 8.7
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014 27 8.7
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 27 8.7
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 8.7
01_06_1777 + 39818212-39819696 27 8.7
01_05_0118 + 18335065-18335553 27 8.7
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 231 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 97
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 89 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 238
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 SSPTSTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSR 187
++P + ++ + D KKK S + N R+RV+ FE +R + L S
Sbjct: 238 ATPKAPKVKEQFQLGDGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASH 297
Query: 188 GSTVSISLPDSARLASAL 241
+T +LPD+ L + L
Sbjct: 298 TNTHRSTLPDTCDLFATL 315
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 SSPTSTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSR 187
++P + ++ + D KKK S + N R+RV+ FE +R + L S
Sbjct: 238 ATPKAPKVKEQFQLGDGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASH 297
Query: 188 GSTVSISLPDSARLASAL 241
+T +LPD+ L + L
Sbjct: 298 TNTHRSTLPDTCDLFATL 315
>06_01_1170 - 10002650-10004122
Length = 490
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 182 SRGSTVSISLPDSARLASALEAFRLIPRMVASHHRPLGE 298
S GS + P +A LA+ALE R+ A H PL E
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPLPE 336
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 240 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 67
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 66 TRASR 52
TRA+R
Sbjct: 64 TRAAR 68
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 140 ETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRLIPRMVASHHRPLGECMNQMSE 319
E +H +PP + +S +A A E +++P +++ H G M ++ E
Sbjct: 300 EEAAAAAHPEQPPTGDANAISEITSTAAERHDAHETMKIVPGVMSLH----GAIMTKIEE 355
Query: 320 TAVPLVLSSITIATTS 367
TA + IT T +
Sbjct: 356 TAQTKTEAVITATTAT 371
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 212 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 108
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 180 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 82
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
Length = 135
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = -2
Query: 369 WLVVAIVILLSTRGTAVSDIWFMHSPSGRWCEATIRGISLNASKAEASLAESGKDMLTVE 190
WL V ++ S + +A+ +W + + + + ++ A A+L + +
Sbjct: 64 WLEVVGRVVGSDKASAMESLWKVVG-AAKHGGGPVAAMARQLPSALATLGAATVPVGASG 122
Query: 189 PRESGGSKQC 160
PR+SGGS++C
Sbjct: 123 PRDSGGSRRC 132
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 27.1 bits (57), Expect = 8.7
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 170 EPP-DSRGSTVSISLPD-SARLASALEAFRLIPRMVASHHRPLGECMNQMSETAVPLVLS 343
+PP DSR VSIS+PD + E+FR P RPLG ++ ++ L S
Sbjct: 403 QPPCDSRTLLVSISIPDWGSDDGITFESFRAAP-------RPLGNAVSYVNSAF--LARS 453
Query: 344 SITIATTSH 370
S+ ++ SH
Sbjct: 454 SVDGSSGSH 462
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 71 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 250
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 182 SRGSTVSISLPDSARLASALEAFRLIPRMVASHHRP-LGECMN 307
+R T SI + + ++A +++ RMV HHRP GE N
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNN 441
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 222 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 94
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,881
Number of Sequences: 37544
Number of extensions: 294107
Number of successful extensions: 890
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -