Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0599
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    29   1.9  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   5.9  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    27   7.8  

>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 364 CRCDSNTAQYERNRSFGHLVHALAERPVVRSYHPRD*PER 245
           CR +S+ +  +      H VH + E P  +S HP+   +R
Sbjct: 404 CRVESSDSDSDSLNQDEHAVHTIEENPNTKSSHPKSENQR 443


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -2

Query: 306 FMHSPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 133
           F + PSG WC     G +   + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 46  FFNRPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 306 FMHSPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRE 181
           F + PSG WC     GI     +AE + A  G  +  ++ R+
Sbjct: 90  FTNRPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 33  YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 140
           YIRT     +VLRKKP  S+       D   +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
            protein H24G06.1a protein.
          Length = 1680

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 2    TDYSSPTSTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 127
            +D  + TST   P  ++R    +  T ++D RD +  RRRV+
Sbjct: 1159 SDDDAITSTTFEPKYKNRIGYRRPSTVTVDTRDADVARRRVA 1200


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -2

Query: 306 FMHSPSGRWCEATIRGISLNASKAEASLAESGKDMLTVE 190
           F + PSG WC     G +   + AE S    G  +  ++
Sbjct: 46  FFNRPSGGWCMRVFAGFNAKKADAEKSCQAVGSTLSGIQ 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,822
Number of Sequences: 27780
Number of extensions: 223855
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)