Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0587
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    28   0.97 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   1.3  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   6.8  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   6.8  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   6.8  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.0  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   9.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.0  

>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 376 AFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALCRRIQHGPER 224
           + T  +S+  S  S L  K  T FSY AG  + CS+ +S     I  GP R
Sbjct: 117 SLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVSGTGELI--GPTR 165


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 HNTKYNQYLKMSTSTCNCNARDRVVYGG 252
           +++ YN+   M TS+C+C++  +  YGG
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGG 73


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 311 RPVLHLQPRIQRCLGARYDRERL 379
           RP +H  P+I R LG  YD   L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 148 NRVYFKAHNTKYNQYLKMSTSTCNCNA 228
           +R +F   + KYN+   + TST   NA
Sbjct: 35  SRTFFSPTHIKYNRLSTLDTSTSTANA 61


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 373 TPRETARPLDTTVKSPVFLKSTRGSLHLSK 462
           TPRETA+ L   + +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 240 CIRRQSADSTREQWFFQPAK-YENDVLFFIYNREFNDALELDTIVNASGDRKAV 398
           C++ + +  T+EQ      + YE + L  I + +FN+   +++I+  + D++ V
Sbjct: 718 CMQLEESIGTQEQRLLSFLRVYEKNTLSEIAHHKFNEYEMVESIILMNDDKRVV 771


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 298 LAGWKNHCSLVLSALCR 248
           L  ++NHCS  LS LCR
Sbjct: 699 LVRFRNHCSDYLSDLCR 715


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 23  NYNLALKLGSTTNPSNERTSTAMVLTSTLNSSVGSSL 133
           +Y+L +  G+T   + +  + A+ +TST+N   GS L
Sbjct: 411 SYDLPISHGTTHVSTVDSNNLAVSITSTVNLLFGSQL 447


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 17  YRNYNLALKLGSTTNPSNERTSTAMVLTSTLNSSVGSSLP 136
           Y +Y+  L   S T  S++  STA+  TST +  V +S P
Sbjct: 60  YTSYSTGL--ASVTESSDDGASTALPTTSTESVVVTTSAP 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,269
Number of Sequences: 5004
Number of extensions: 35574
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)