Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0587
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)                  28   4.1  
SB_2010| Best HMM Match : Ribosomal_L32p (HMM E-Value=7.5e-06)         27   7.1  
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)         27   9.4  

>SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 299 VRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRW 400
           V +RRP       IQR L +  DR+ LGR Q RW
Sbjct: 9   VIRRRPGGKAFTCIQRFLSSTNDRDLLGRQQSRW 42


>SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)
          Length = 309

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 326 LQPRIQRCLGA-RYDRERLGRPQGRWT 403
           LQPRI RC GA RYD  +  R  GR T
Sbjct: 210 LQPRISRCPGARRYDMHK-ARESGRET 235


>SB_2010| Best HMM Match : Ribosomal_L32p (HMM E-Value=7.5e-06)
          Length = 140

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 98  STPSP*KFSHSRDWLWNRASERGCSFC 18
           +TPS  K  H   WL NR     C+ C
Sbjct: 67  TTPSKKKLRHQHKWLKNRTDIEVCAVC 93


>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
          Length = 863

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 114 RQLEVHYLVGEQQSVLQGPQH*VQPVLEDEYVDLQLQR 227
           RQ+ + ++VG +  V     + ++ + ED +VD+Q+ R
Sbjct: 786 RQVPISFIVGARSWVNNESSYEIKRIREDSFVDIQVIR 823


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,373
Number of Sequences: 59808
Number of extensions: 269458
Number of successful extensions: 948
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)