Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0587
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16050.1 68417.m02435 expressed protein                             28   3.3  
At5g11870.1 68418.m01389 expressed protein                             27   5.8  
At2g10440.1 68415.m01097 hypothetical protein                          27   5.8  
At1g28560.1 68414.m03515 snRNA activating complex family protein...    27   5.8  

>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 288 QPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPE 431
           + A+ E+D    I  R  N   + D I N  G+R  +  D  VSGLP+
Sbjct: 535 ESAETEDDDNMTIAQR-INSRKKSDDIENTEGERSRLVADNNVSGLPQ 581


>At5g11870.1 68418.m01389 expressed protein
          Length = 262

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -2

Query: 185 LYLVLWALKYTLLFS--HKVMNFQLTSSVCLSTPS---P*KFSHSRDWLWNRAS 39
           L++   ++ Y  +F+     M FQL   + +   +   P K++HSR WLW  A+
Sbjct: 157 LFISCLSVAYARVFNDLRLCMTFQLIPCLVIPVMAVLLPPKYTHSRFWLWATAA 210


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 73  ENFYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTSTCNCNA 228
           ENFY    DK T    W       N  V   A +  YN+     T TC+  A
Sbjct: 66  ENFYSIATDKTTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTA 117


>At1g28560.1 68414.m03515 snRNA activating complex family protein
           similar to snRNA activating protein complex 50 kDa
           subunit (SNAPc 50 kDa subunit) (Proximal sequence
           element-binding transcription factor beta subunit)
           (PSE-binding factor beta subunit) (PTF beta subunit)
           (Swiss-Prot:Q92966) [Homo sapiens]
          Length = 375

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 216 QLQRSGPCCIRRQSADSTREQWFFQPAKYENDVLFFIYNRE 338
           ++Q+ G C I+R S  +  ++W  + + Y  DV F + + E
Sbjct: 319 RIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLHSE 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,996,274
Number of Sequences: 28952
Number of extensions: 180146
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)