Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0586
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.4  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   7.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   9.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   9.5  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   9.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   9.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.5  

>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 288 HTAWGFISEASAQSARPRTHRPISYIPLPRTLWKSTCTN 172
           H AWG  + +++ SA P     +S+  +  ++WK    N
Sbjct: 17  HNAWGSENISNSNSAIPSITNDVSF-SMEASVWKENALN 54


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 335 VDYNAQRELRAGCYNCQKTVGVVRKKFDETKYEDFLVG 448
           +D      L  G Y+C+K   +   KF E  Y   +VG
Sbjct: 531 IDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAKAVVG 568


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +3

Query: 102  MVKQARDQLQSNETQEEIKEVFEGSCKLISIKFVAEGCMKLADEF 236
            +V    + + +NE+  ++ ++   + K+ S K + + CM +  +F
Sbjct: 1223 LVSNLSNHVLTNESARQLTKIRSKNAKVFSSKRLVKACMTILGKF 1267


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 60  FPEDNDNVCQICLDMVK--QARDQLQSNET 143
           FP+ N  + Q+ LD+ K   A+ QL + ET
Sbjct: 61  FPQQNTQISQLHLDLAKFHLAKHQLLNKET 90


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 15  NATPHCINRVWSKMTFPEDNDNVCQICLDMVKQARDQLQSNETQEEIKEV 164
           N    C+N + S   +PE N      C D VK    + + + T+ + + +
Sbjct: 736 NQPAECVNILTSTQRYPEANLFAATYCPDEVKNVLPEWKVDLTKNQKERI 785


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 422 TKYEDFLVGLLQVCRNMDSLSDSCSMLIFNT 514
           T Y+ F   L+  C+N D   D  S+ I  T
Sbjct: 50  TSYQSFANFLVDYCKNQDQSVDIKSLCILGT 80


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 179 ARTLEYFFYFFLSFVA 132
           A+ + YFF FF+SF++
Sbjct: 290 AKVIPYFFAFFVSFIS 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,119
Number of Sequences: 5004
Number of extensions: 43165
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)