Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0586
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220...    36   0.015
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342...    36   0.027
03_02_0198 + 6344952-6347483                                           30   1.0  
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821     28   5.4  
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744...    28   5.4  
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540     28   5.4  
10_05_0075 + 8869087-8869413,8869823-8870053,8871145-8871267,887...    27   9.5  
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138...    27   9.5  
01_03_0160 - 13327527-13327846,13327945-13328206                       27   9.5  

>05_03_0566 -
           15521494-15521511,15521550-15521747,15521856-15522037,
           15522643-15522721
          Length = 158

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 15  NATPHCINRVWSKMTFPEDNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSC-KLIS 191
           NA    I+ + + +T   D   +CQIC +   +A   L  NETQ EI      +C K  S
Sbjct: 25  NAVGEKISNMETSLTMKVD-PQLCQICEEFATEALFYLNENETQVEIIATLHQACSKFPS 83

Query: 192 IKFVAEGCMKLADEFV 239
            K     C KL D +V
Sbjct: 84  FKL---ECTKLVDYYV 96


>01_01_0462 +
           3422352-3422439,3423057-3423241,3423333-3423530,
           3423617-3423676,3424022-3424171
          Length = 226

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 72  NDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISIKFVAEGCMKLADEFV 239
           N  +CQ+C     +A   LQ NETQ EI  +   +C   ++  + + C+ L D ++
Sbjct: 47  NGKLCQLCEQYSTEALFYLQQNETQTEILSILHHAC--ANVGPLKQQCITLVDYYI 100


>03_02_0198 + 6344952-6347483
          Length = 843

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -2

Query: 201 RTLWKSTCTNPRILLLFLPEFRCSVVG-LSPASPCPSISGIRCRCPPG 61
           R  W  T     IL   LP   C V G   P   C + +   CRCP G
Sbjct: 282 RRQWSETA-GKWILFCSLPHDACDVYGSCGPFGVCSNATNPECRCPAG 328


>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
          Length = 576

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 144 QEEIKEVFEGSCKLI 188
           QEE+KE FEG CK+I
Sbjct: 280 QEELKEKFEGLCKVI 294


>09_04_0548 -
           18469636-18470037,18471164-18472705,18474052-18474474,
           18474874-18474999
          Length = 830

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 144 QEEIKEVFEGSCKLI 188
           QEE+KE FEG CK+I
Sbjct: 534 QEELKEKFEGLCKVI 548


>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
          Length = 699

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 144 QEEIKEVFEGSCKLI 188
           QEE+KE FEG CK+I
Sbjct: 534 QEELKEKFEGLCKVI 548


>10_05_0075 +
           8869087-8869413,8869823-8870053,8871145-8871267,
           8871873-8872091
          Length = 299

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 325 SAACRLQRPKRTKGRLLQLSEDRRCC 402
           SA+ R + P+R +  L Q S  RRCC
Sbjct: 22  SASPRARPPRRHRRHLHQASSGRRCC 47


>05_07_0145 +
           28012268-28012624,28012734-28012794,28013758-28013852,
           28013944-28014056,28014436-28014604,28014677-28014716,
           28014797-28014861,28015485-28015598,28015687-28015751,
           28015927-28016083,28016167-28016286,28016447-28016535,
           28016631-28016715
          Length = 509

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
 Frame = +2

Query: 257 LASEMNPQAVCSVAGLCN-------NAKIDRLLVDYNAQRE-LRAG--CYNCQKTVGVVR 406
           L +E  P  +CS  GLC        +A I  ++ D   +   L++G  C  C+  V  ++
Sbjct: 335 LLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDEAGESNGLQSGPMCNACEMAVVWMQ 394

Query: 407 KKFDETKYEDFLVGLL-QVCRNMDS 478
            +  + K +D ++  + Q+C  + S
Sbjct: 395 NQLAQNKTQDLILNYINQLCDKLPS 419


>01_03_0160 - 13327527-13327846,13327945-13328206
          Length = 193

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 284 RLGGSSLKRALNQL-DHELIGQFHTSLCHELY-GNQLARTLEYFF 156
           +L  S L  ALN + +H  I +FH +L HE Y GN+    + YFF
Sbjct: 59  KLVRSQLPGALNNVFEHIRILEFHPALLHETYIGNEEDGYI-YFF 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,081
Number of Sequences: 37544
Number of extensions: 314060
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)