Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0586
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   44   1e-04
SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      42   2e-04
SB_51023| Best HMM Match : POLO_box (HMM E-Value=3.6)                  31   0.45 
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      30   1.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  30   1.0  
SB_36712| Best HMM Match : Adeno_PIX (HMM E-Value=4.8)                 29   3.2  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_53315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_4820| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_12527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_15070| Best HMM Match : Abi_2 (HMM E-Value=5.5)                     27   9.7  
SB_51369| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)                  27   9.7  
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +3

Query: 6   RECNATPHCINRVWSKMTFPEDNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKL 185
           +EC+A  HC N VW      + N + C IC  +V + +D L     + ++K + +  C  
Sbjct: 377 QECDAVEHCKNSVW------KYNQDTCAICEAVVGKVKDALDDKSMEGKVKAILDEICDK 430

Query: 186 ISIKFVAEGCMKLADEFVVELIER 257
               F  E C K+ D +   +I +
Sbjct: 431 DGGFFAGE-CKKVVDTYFTMIISQ 453


>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +3

Query: 51  KMTFPEDNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISIKFVAEGCMKLAD 230
           K T+P      C +C  ++K+  D L  N TQ+EI +  E  C ++    +   C +   
Sbjct: 208 KATYPVKTSTECVLCEFVMKELDDMLSKNSTQQEIIQAVEKVCSILP-STIKSKCDQFVQ 266

Query: 231 EFVVELIERSLQR*TPK 281
           E+   LIE   Q  +PK
Sbjct: 267 EYGPALIEILEQEVSPK 283



 Score = 30.7 bits (66), Expect = 0.79
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 72  NDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISIKFVAEGCMKLADEF 236
           ++  C+IC  ++   +  L +N T EEI    E  C  +  +  +E C  +  E+
Sbjct: 311 SNETCEICTTVMTYLKAFLNNNATDEEIVNFLEKVCNYLPSQIASE-CNAIVSEY 364



 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = +2

Query: 257 LASEMNPQAVCSVAGLCNNAKIDRLLVDYNAQRELRAG--CYNCQKTVGVVRKKFDETKY 430
           L  E++P+ VC+  GLC N +  R+ +  + +  + +   C  C   +  ++   +    
Sbjct: 276 LEQEVSPKLVCTTLGLCANRE-HRIAMRRSHKLVIGSNETCEICTTVMTYLKAFLNNNAT 334

Query: 431 EDFLVGLLQ-VCRNMDS-LSDSCSMLI 505
           ++ +V  L+ VC  + S ++  C+ ++
Sbjct: 335 DEEIVNFLEKVCNYLPSQIASECNAIV 361


>SB_51023| Best HMM Match : POLO_box (HMM E-Value=3.6)
          Length = 283

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 78  NVCQICLDMVKQARDQLQSNETQ----EEIKEVFEGSCKLISIKFVAEGCMKLADEFVVE 245
           N C +C++  +Q RD+++++  +    E+ +++F+G           EGC  L DE  ++
Sbjct: 48  NNCMMCINFTEQFRDRMEADFGRAAFGEDRQQIFKGIISCFE-TIGEEGCRYLLDEVFLD 106

Query: 246 LIERSLQR*TP 278
           L    +Q  TP
Sbjct: 107 LNPFFIQIMTP 117


>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 81  VCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISI 194
           VC +C ++V ++    + +   E+IK +F+G  K+I +
Sbjct: 17  VCTVCDNLVTKSYSCYKKDNAPEKIKHLFDGDVKVIKV 54


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 81  VCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISI 194
           VC +C ++V ++    + +   E+IK +F+G  K+I +
Sbjct: 393 VCTVCDNLVTKSYSCYKKDNAPEKIKHLFDGDVKVIKV 430


>SB_36712| Best HMM Match : Adeno_PIX (HMM E-Value=4.8)
          Length = 320

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 433 RLFSGTPAGMPQHGLIIRLLFDADIQYY 516
           +LFS T  G+  H +IIR LF  D+  Y
Sbjct: 242 KLFSKTSTGVRYHPMIIRFLFLTDVLSY 269


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 398 VVRKKFDETKYEDFLVGLLQVCRNMDSLSDSCSMLIFNT 514
           VV   +DE K EDF +G  +V   + S SD+C  +  NT
Sbjct: 882 VVGAVYDEKKLEDFKIG-DEVQAFVKSTSDNCIWMAINT 919


>SB_53315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 257 LASEMNPQAVCSVAGLCNNAK 319
           L+ E+NP  VC+  GLC+  K
Sbjct: 129 LSQELNPDMVCTSLGLCSGVK 149


>SB_4820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 293 QSTRLGGSSLKRALNQLDHELIGQFHTSLCHELYGNQLARTLEYF 159
           + T   G  ++RALN  D  +    H S+  +L G+ +  TLE F
Sbjct: 57  EPTVSAGLEIERALNAGDALIYHSLHKSVLGDLVGDSVGITLEEF 101


>SB_12527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 65  GGQRQRMPDMLGH-GEAGERPTTEQRNSGRNK-RSIRGFVQVDFHKVRGRGMYEIGR*VR 238
           GG+R    +  G+ G +    T + R S  N+ R IRGF++   +    R +YE+G  + 
Sbjct: 195 GGERGERDEKGGNCGGSFYSGTYQTRYSRTNQTRKIRGFLRFHVYFTTRRLLYELGAPLP 254

Query: 239 GRAD*ALASEMNPQAVCSVAGLC 307
           G  D     + NP    +   LC
Sbjct: 255 G--DSPFTQKDNPYKKAAFERLC 275


>SB_15070| Best HMM Match : Abi_2 (HMM E-Value=5.5)
          Length = 390

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 165 FEGSCKLISIKFVAEGCMKLADEFV 239
           F  +CKL+ +KF+  G  + A EF+
Sbjct: 12  FPSNCKLLDVKFLKNGIRENAGEFL 36


>SB_51369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 15  NATPHCINRVWSKMTFPEDNDNVCQICLDMVKQARDQLQSNETQ 146
           +ATP      WS M  P      C + L +    R  + S+ETQ
Sbjct: 133 SATPEVHGEAWSLMYHPHTITYTCNMTLVIFISERKSMISSETQ 176


>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = -2

Query: 177 TNPRILLLFLPEFRCSV--VGLSPASPCP------SISGIRCRCPPGRS 55
           T   +L L L  F  SV   GL  ++PC       S SG  C CPPG S
Sbjct: 5   TEAAVLSLVLATFVGSVQGTGLCASNPCTLGACMESPSGYYCICPPGYS 53


>SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)
          Length = 318

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 504 ISIEQESDNESMLRHTCRSPTKKSSYLVSSNFFL 403
           + IE+ES++   ++ T R P + S+Y+ S  F L
Sbjct: 66  LKIEEESESGQQVQSTIRVPMQVSTYITSLLFSL 99


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = -2

Query: 297 ATEHTAWGFISEASAQSARPRTHRPISYIPLPRTLW 190
           + ++TAW            P+ + P+ + P+P + W
Sbjct: 811 SVQNTAWTSCCRMIYVKTNPKLNTPVGFWPIPESFW 846


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,516
Number of Sequences: 59808
Number of extensions: 365761
Number of successful extensions: 1137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)