Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0586
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27220.1 68414.m03315 paired amphipathic helix repeat-contain...    36   0.023
At5g01800.1 68418.m00099 saposin B domain-containing protein con...    33   0.16 
At5g67580.2 68418.m08522 myb family transcription factor contain...    30   0.85 
At5g67580.1 68418.m08521 myb family transcription factor contain...    30   0.85 
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    30   0.85 
At1g51950.1 68414.m05856 auxin-responsive protein / indoleacetic...    29   1.5  
At3g51730.1 68416.m05672 saposin B domain-containing protein con...    28   4.5  
At3g55005.1 68416.m06106 tonneau 1b (TON1b) identical to tonneau...    27   6.0  
At4g28530.1 68417.m04082 no apical meristem (NAM) family protein...    27   7.9  
At3g02170.1 68416.m00190 expressed protein                             27   7.9  

>At1g27220.1 68414.m03315 paired amphipathic helix repeat-containing
           protein similar to transcriptional repressor SIN3B [Mus
           musculus] GI:2921547; contains Pfam profile PF02671:
           Paired amphipathic helix repeat
          Length = 184

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 51  KMTFPEDNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLIS-IKFVAEGCMKLA 227
           K TF  D D        M      ++  N   EE+KE+ +G   LIS        C+++A
Sbjct: 23  KSTFHNDPDKYDDFMAIMKNFKARKIDRNTCIEEVKELLKGHRDLISGFNAFLPKCLEIA 82

Query: 228 DEFVVELIERSLQ 266
           D + +E++E  LQ
Sbjct: 83  DWYNIEVLEAELQ 95


>At5g01800.1 68418.m00099 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 217

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 69  DNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISIKFVAEGCMKLADEF 236
           D++ VC++C   V    D LQ  + Q E+ E    SC    I  + + C+ + D +
Sbjct: 34  DDNQVCELCDKYVTLVIDYLQDYDNQNELVEALHISCS--QIPPLKKQCLSMVDHY 87



 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 302 LCNNAKIDRLLVDYNAQRELRAGCYNCQKTVG--VVRKKFDETKYEDFLVGLLQVCRNMD 475
           +C    + + +    A +  +  C  C++TV   V + K  ETK +   + LL+ C++++
Sbjct: 103 ICKRLNLCQAVTPAFASQVHQGNCEACRETVSEVVTKLKDPETKLKIIRL-LLKECKSLN 161

Query: 476 SLSDSCSMLIF 508
           +  D C  ++F
Sbjct: 162 NYQDKCKKMVF 172


>At5g67580.2 68418.m08522 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 299

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 32  HQPRVVQNDLPGGQRQRMPDMLGHGEAGERPTTEQRNSGRNKRSIRGFVQVDFHKVRG 205
           H+ R   N +P G RQ+ P +   G   + PT  + N   +    R  V  + + ++G
Sbjct: 183 HKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFR--VDGELYMIKG 238


>At5g67580.1 68418.m08521 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 299

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 32  HQPRVVQNDLPGGQRQRMPDMLGHGEAGERPTTEQRNSGRNKRSIRGFVQVDFHKVRG 205
           H+ R   N +P G RQ+ P +   G   + PT  + N   +    R  V  + + ++G
Sbjct: 183 HKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFR--VDGELYMIKG 238


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 44  VVQNDLPGGQRQRMPDMLGHGEAGERPTTEQRNSGRNKRSIRGFVQVDFHKVRGRGMYEI 223
           V+ +DLP G+R+   D    GE      T+    G + + I   +  DF       ++ I
Sbjct: 409 VIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRI 468

Query: 224 GR*VRGRA 247
           GR   GRA
Sbjct: 469 GR--SGRA 474


>At1g51950.1 68414.m05856 auxin-responsive protein / indoleacetic
           acid-induced protein 18 (IAA18) identical to
           SP|O24408|AXII_ARATH Auxin-responsive protein IAA18
           (Indoleacetic acid-induced protein 18) {Arabidopsis
           thaliana}
          Length = 267

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 492 QESDNESMLRHTCRSPTKKSSYLVSSNFFLTTPT 391
           +E D+ESM+RH  + P  KS   ++  +F  + T
Sbjct: 51  EEDDDESMIRHMKKEPKDKSILSLAGKYFSPSST 84


>At3g51730.1 68416.m05672 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 213

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 66  EDNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISIKFVAEGCMKLADEF 236
           E   + C +C   V +   +LQ  +TQ +I E+    CK  S+K   + C  L  E+
Sbjct: 120 EARQDSCGVCHRTVSEILIKLQDPDTQLDIVELLIKGCK--SLKNYEKKCKTLVFEY 174


>At3g55005.1 68416.m06106 tonneau 1b (TON1b) identical to tonneau 1b
           (TON1b) GI:11494366 from [Arabidopsis thaliana]
          Length = 257

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 531 FQNVLVVLNISIEQESDNESMLRHTCRSPTKKSS 430
           F+N+  V+  S  +ES+ ES L    R+P ++SS
Sbjct: 143 FENMTQVMGGSSRRESETESSLSLDTRNPPRRSS 176


>At4g28530.1 68417.m04082 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           No apical meristem gene (NAM), required for pattern
           formation in embryos and flowers-Petunia hybrida,
           PATCHX:E205713
          Length = 352

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 63  PEDNDNVCQICLDMVKQARDQLQSNETQEEIKEVFEGSCKLISI 194
           P D + VC    + ++   D    ++  +++ E  +GS  L+ I
Sbjct: 18  PSDEELVCHYLCNKIRAKSDHGDVDDDDDDVDEALKGSTDLVEI 61


>At3g02170.1 68416.m00190 expressed protein
          Length = 905

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 123 QLQSNETQE-EIKEVFEGSCKLISIKFVAEGCMK 221
           Q Q+N T+    K VF+   ++++ KF AEGC+K
Sbjct: 784 QQQTNPTETIRRKLVFDTVNEILARKFTAEGCIK 817


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,421
Number of Sequences: 28952
Number of extensions: 240320
Number of successful extensions: 762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)