Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0584
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    27   1.6  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   6.3  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   6.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   6.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   8.4  

>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +3

Query: 60  TAGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMSEEFCYMPKRLMLPRGTEGG 239
           T+  +KII    ++ I+  +     E  K+ D   +PF ++  F ++  R+ + + T   
Sbjct: 8   TSLTSKIINLPIDYFIYVCEQFDSVEWDKVSDRYSIPFSLAVNFIFLLMRIYI-KSTHVP 66

Query: 240 FPFQLLFSSIHSTTKARTW 296
                LF    S   +R+W
Sbjct: 67  VQRNQLFVDKQSINTSRSW 85


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 205 KDSCCLEVLKVDSHSSSCFRLSIRQQRQGLGSFR 306
           K S   +V+++D H    FR+  R    GL  F+
Sbjct: 461 KHSLITDVVEIDRHWLKAFRMVTRNDETGLWDFK 494


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 271 WIDENKSWNGNPPSVP 224
           ++DEN S N  PPS+P
Sbjct: 121 FLDENHSTNSKPPSLP 136


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 92  RIADNLVLTSGEFSCEPV 39
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 369 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG 268
           +A TTG S GKP G  + T   KG  +      G
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTG 297


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 27  FFELDWFTTKLTAGQNKIIRNS 92
           F  LDWFT   +  QN+++R S
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRS 675


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 203 RHVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 51
           R + EL   + R FS   + H FS W  +F  +  FI     D  +L+  E S
Sbjct: 273 RSLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,927
Number of Sequences: 5004
Number of extensions: 56975
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)