Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0584
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332 29 2.1
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 29 2.1
01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047 29 2.8
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 29 2.8
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562... 28 4.9
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 28 6.5
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 6.5
07_03_1784 - 29492511-29492804,29492913-29492999,29493076-294932... 27 8.6
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688 27 8.6
>05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332
Length = 225
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 178 CRKSSVTCLKDSCCLEVLKVDSHSSSCFRLSIRQQRQGLGSFRIFCS*Q*ASWL 339
C+ S C S E ++ + + C L++R+Q +G+G + I Q WL
Sbjct: 170 CKPSPFCCFMRSSGEEFVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWL 223
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 36 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 149
+D F T +T KI RNS +F DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315
>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
Length = 440
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -3
Query: 236 TFSTSRQHESFRHVTELFRHIKRYFSFV-EHLHNFSHWHGVFFKYDKFIRIADNLVLTSG 60
+FS R R ++ + + F+ +F HW K +KF R DNL+L
Sbjct: 21 SFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHW-----KVEKFARFVDNLLLIRS 75
Query: 59 EFSCEPVQLEEFNPVVL*C 3
+ QL F+ + L C
Sbjct: 76 KVDLHTFQLYWFHYLPLNC 94
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 29.1 bits (62), Expect = 2.8
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1
Query: 280 VVEWIDENKSWNGNPP 233
++EW+D+N++W G P
Sbjct: 775 LIEWVDDNENWKGESP 790
>03_05_0096 +
20754478-20754584,20755548-20755677,20756212-20756268,
20756741-20756794,20757610-20758287
Length = 341
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = -3
Query: 287 CLCCRMDRRKQELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWH 123
C CC++ + +S +H+ FR + +K + + V+H+ N + W+
Sbjct: 231 CFCCKIFNSRN-------CKSSLEHDGFRDWRHISERLKEHKASVKHITNMTSWN 278
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 242 PIPALVFVYPFDNKGKDLAPF-ESFVLDNKPLGFPLD 349
P +F+ FDN G LAPF S + D K + PL+
Sbjct: 438 PCAEALFIILFDNYGVQLAPFVASIIHDVKAVSPPLE 474
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +3
Query: 84 RNSNEFVIFKEDSVPMTEIMKMLD 155
RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862
>07_03_1784 -
29492511-29492804,29492913-29492999,29493076-29493222,
29493522-29493690,29493777-29494015,29494111-29494356,
29494419-29495084
Length = 615
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 6 LEDNWIKFFELDWFTTKLTAGQNKIIR-NSNEFVIFKEDSVPMTEIMKMLD 155
+EDNW+ +E D FT KLT + ++R +E+ + ++D ++ + D
Sbjct: 536 IEDNWVPVWEED-FTFKLTVPEIALLRVEVHEYDMSEKDDFGGQTVLPVSD 585
>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
Length = 241
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 193 VTCLKDSCCLEVLKVDSHSSSCFRLSIRQQRQGLGSFRIFCS*Q*ASWL 339
++C+ S E ++ + + C L++R+Q +G+G + I Q WL
Sbjct: 191 LSCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWL 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,590
Number of Sequences: 37544
Number of extensions: 328478
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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