Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0584
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    31   0.82 
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical p...    28   5.8  
U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    27   7.7  
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    27   7.7  
AF016452-18|AAB66009.1|  405|Caenorhabditis elegans Hypothetical...    27   7.7  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 170 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFNPVVL 9
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E +P+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 63  AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 182
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 63  AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 182
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 472 IRLCVIRRNIEFVREPFTLVVNENILEIHVRNLE*CINNGAI 347
           I L ++   + ++RE    V+NE IL++ + N+   I NG +
Sbjct: 39  IYLRIMPNGLAYLREVGMKVINEQILKLQLPNIREPIENGEV 80


>U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical
           protein F19F10.10 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 31  SSWTGSQLNSPLVRTRLSAIRMNLSYLKKTP 123
           S +  S +NSP VRT L+++R+ +  LK  P
Sbjct: 205 SEFANSVINSPAVRTGLNSLRIFIVSLKTGP 235


>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +3

Query: 120 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 239
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +3

Query: 120 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 239
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


>AF016452-18|AAB66009.1|  405|Caenorhabditis elegans Hypothetical
           protein T05H4.2 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
 Frame = -3

Query: 155 VEHLHNFSH----WHGVFFKYDKFIRIADNLVLTSGE---FSCEPVQ 36
           VEHL NF      +HG  F  D  +++ D ++L S +   FSC+ V+
Sbjct: 308 VEHLDNFKSLNFDFHGEPFSRDDIMKLRDEVLLKSTKFEYFSCKNVK 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,770
Number of Sequences: 27780
Number of extensions: 314541
Number of successful extensions: 884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)