Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0584
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.44 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.77 
At5g47400.1 68418.m05841 hypothetical protein                          29   3.1  
At3g49020.1 68416.m05355 F-box family protein contains F-box dom...    28   4.1  
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    27   7.2  
At3g09830.2 68416.m01173 protein kinase, putative similar to pro...    27   9.5  
At3g09830.1 68416.m01172 protein kinase, putative similar to pro...    27   9.5  
At2g46760.1 68415.m05834 FAD-binding domain-containing protein s...    27   9.5  
At2g30530.1 68415.m03718 expressed protein                             27   9.5  
At2g04270.3 68415.m00418 glycoside hydrolase starch-binding doma...    27   9.5  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 351 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 494
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 308 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 406
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At5g47400.1 68418.m05841 hypothetical protein 
          Length = 665

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 248 PALVFVYPFDNKGKDLAPFESFVLDNKPL 334
           P+LVF++PF  +      F++ +L  KPL
Sbjct: 22  PSLVFLFPFTRRDLSRLAFQTLLLRRKPL 50


>At3g49020.1 68416.m05355 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 447

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 523 ITDAKSSVYLNLIFWNNIRLCVIRRNIEFVREPFTLV---VNENILE 392
           + +A S  YLN+  +N +  C+I +  E V    + V    NENI++
Sbjct: 237 VINAPSLKYLNIDGFNGLEFCLIEKAPELVEAKISAVFEIANENIMD 283


>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 154 TKEKYLLICRKSSVTCLKDSCCLEVLKVDSHSSSCFRLSIRQQRQGLGSFR 306
           T+  Y L+     + CLKD     VL+ +     C +L++ +    + SFR
Sbjct: 164 TQTLYNLVAATEDLRCLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFR 214


>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 523 ITDAKSSVYLNLIFWNNIRLCVIRRNIEFVR---EPFTLVVNENILE 392
           + +A S  YLN++ +  +  C+I    E V       + + NENILE
Sbjct: 239 VINAPSLKYLNIVGFEGLDFCLIENAPELVEAEISDVSHIANENILE 285


>At3g09830.2 68416.m01173 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 418

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 337 AKRLIVKNK--RFERSQVLAFVVEWIDENKSWNGNPPSVPLGSM 212
           A R +V+N   R + S+VL  V + I E  S NG+P  VPL S+
Sbjct: 344 ANRCLVRNSKARPKMSEVLEMVNK-IVEASSGNGSPQLVPLNSV 386


>At3g09830.1 68416.m01172 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 418

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 337 AKRLIVKNK--RFERSQVLAFVVEWIDENKSWNGNPPSVPLGSM 212
           A R +V+N   R + S+VL  V + I E  S NG+P  VPL S+
Sbjct: 344 ANRCLVRNSKARPKMSEVLEMVNK-IVEASSGNGSPQLVPLNSV 386


>At2g46760.1 68415.m05834 FAD-binding domain-containing protein
           strong similarity to At1g32300, At2g46740, At2g46750,
           At5g56490; contains PF01565: FAD binding domain
          Length = 603

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 KSSVTCLKDSCCLEVLKVDSHSSSC 258
           K +VT +KD C LE L V S  + C
Sbjct: 545 KGNVTIIKDGCALEGLCVCSEDAHC 569


>At2g30530.1 68415.m03718 expressed protein
          Length = 371

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 13  TTGLNSSSWTGSQLNSPLVRTRLSAIRMNLSYLKKT 120
           T+G   +  TG +  +P ++ RL AI  +L+Y+  T
Sbjct: 144 TSGTKEAGQTGRKSENPSLQRRLDAITSSLNYIGGT 179


>At2g04270.3 68415.m00418 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 619

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 290 PCLCCRMDRRKQELEWESTFSTSRQHESFRHVTELFRHIKRYFSF 156
           PC CC    R + L  E+TFS   Q    + V+ +   +  YFSF
Sbjct: 569 PCSCCHATGRVEAL--ETTFSKIEQEICRQLVSVIISILFCYFSF 611


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,164
Number of Sequences: 28952
Number of extensions: 285197
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)