Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0578
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015C4F96 Cluster: putative transcriptional regulat...    36   1.2  
UniRef50_A0BZE0 Cluster: Chromosome undetermined scaffold_139, w...    33   6.3  
UniRef50_A1WF35 Cluster: Putative uncharacterized protein; n=2; ...    33   8.3  

>UniRef50_UPI00015C4F96 Cluster: putative transcriptional regulator,
           AraC family; n=1; Escherichia coli HS|Rep: putative
           transcriptional regulator, AraC family - Escherichia
           coli HS
          Length = 237

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = -3

Query: 602 SYSVSGYTIRAMRPLSTVYPCAGVSMYGNMDICLPNLET*MLDSLEVDVKRNKVHLNCSA 423
           +Y++S +++R   P   +  C   S+  N+  CL        DS  VDV RN++ L C A
Sbjct: 64  NYTLSPFSVRRFYPSYLIVECEDFSLLRNLVACLN------CDSKTVDVVRNQISLACLA 117

Query: 422 RDVSELIPIPNFITG 378
              SE I + +F+ G
Sbjct: 118 VLSSEKI-VQSFLFG 131


>UniRef50_A0BZE0 Cluster: Chromosome undetermined scaffold_139,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_139,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 866

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 504 AYVHITIHTNACTWIYCGEWSHSSYGVT 587
           A +   IH  +C W + G++SH++YGV+
Sbjct: 297 AVLFFIIHMFSCFWFWVGDYSHNNYGVS 324


>UniRef50_A1WF35 Cluster: Putative uncharacterized protein; n=2;
           Verminephrobacter eiseniae EF01-2|Rep: Putative
           uncharacterized protein - Verminephrobacter eiseniae
           (strain EF01-2)
          Length = 207

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 108 IILLLSCICTVNFLFSYLNSSKLT 37
           + ++LSCICT+ F F Y++  KLT
Sbjct: 66  LTVVLSCICTLTFYFGYISRVKLT 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,837,834
Number of Sequences: 1657284
Number of extensions: 12546908
Number of successful extensions: 28452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28442
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)