Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0578
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.46 
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    27   2.5  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    27   3.3  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    25   9.9  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   9.9  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 23/91 (25%), Positives = 42/91 (46%)
 Frame = -3

Query: 608 HSSYSVSGYTIRAMRPLSTVYPCAGVSMYGNMDICLPNLET*MLDSLEVDVKRNKVHLNC 429
           H+  + S  T  ++ PL+ V   +G S  G      PNL      +  +D+K  K  ++ 
Sbjct: 609 HTITTSSKNTTSSINPLTAVSSNSGQSS-GRPGPLSPNLNV----TTRIDIKGKKGSMHL 663

Query: 428 SARDVSELIPIPNFITGGDKSYDELISRKNK 336
             RDV+  +P  +  T   KS D ++  +++
Sbjct: 664 QPRDVNRKVPFKSMHT-KSKSADPVVGNEDR 693


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 543 WIYCGEWSHSSYGVTRNTIRAMRPLSIVSILPYILTPAHGY 665
           W+  G  SH S  + R    A+   +   +LP  +T  HG+
Sbjct: 287 WLLHGLKSHGSLEIDRGAFEAITRTNRAGLLPVGVTKVHGH 327


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 483 LCF*IGKAYVHITIHTNACTWIYCGEWSHSSYGVTRNTIRAMRPLSIVSIL 635
           L F IG  + H  +  N  + ++C    H S G+T   +R     SI S L
Sbjct: 23  LYFTIGTNFPHDELRHNLLSTLFCSSMLHLSKGLTVKDVRIFFHDSIGSTL 73


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 611 TTLHSVHITIHTNACTWIYC 670
           T L  V + I  N CTW+ C
Sbjct: 249 TVLGKVGMDIQDNKCTWLVC 268


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 126  NILKCYIILLLSCICTVNFLFSYLNSS 46
            N+LK Y+ L  +CIC  N   S + ++
Sbjct: 1504 NLLKGYLWLFSNCICRDNITLSRIGTN 1530


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 638 W*YGHYGEWSHSSY 597
           W Y HY EW H  Y
Sbjct: 289 WHYFHYSEWLHMIY 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,719
Number of Sequences: 5004
Number of extensions: 58904
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)