Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0578
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0310 + 7315185-7316820,7318332-7318879                           31   0.84 
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857...    29   3.4  
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607...    29   4.5  
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349...    29   4.5  
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796...    29   4.5  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    28   7.8  

>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 531 NACTWI---YCGEWSHSSYGVTRNTIR 602
           N CTW+    CG W H +  + RN IR
Sbjct: 420 NTCTWVGCDVCGHWCHVACALERNLIR 446


>11_04_0001 +
           11984639-11984875,11984989-11985278,11985361-11985719,
           11985797-11985984,11986058-11986247,11986497-11986631,
           11986694-11986947
          Length = 550

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 161 LNIITKKKDSTKIFSNAILYCYYHV 87
           L+ +  K+   KIFSNAI+ CY H+
Sbjct: 53  LDFMVMKERMYKIFSNAIVVCYSHL 77


>10_08_0949 -
           21759821-21759833,21759985-21760301,21760650-21760728,
           21760816-21760912,21761305-21761410
          Length = 203

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 127 KYSQMLYYIVIIMYLHCEFFILLSQ 53
           KY Q   YI  IMY HC FF+ L Q
Sbjct: 56  KYWQRPEYIKYIMYPHCLFFLELLQ 80


>07_01_0461 +
           3492302-3492413,3492868-3492964,3493053-3493131,
           3493484-3493794,3494219-3494231
          Length = 203

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 127 KYSQMLYYIVIIMYLHCEFFILLSQ 53
           KY Q   YI  IMY HC FF+ L Q
Sbjct: 58  KYWQRPEYIKYIMYPHCLFFLELLQ 82


>04_04_1270 -
           32278793-32279095,32279177-32279327,32279427-32279664,
           32279778-32279988,32280067-32280248,32280332-32280448,
           32280828-32282094
          Length = 822

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
 Frame = -3

Query: 614 WSHSSYSVSGYTIRAMRPLSTV--YPCAGVSMYGNMDICLPNLET*MLDSLEVDVK---- 453
           W  SS   S +T+R  RP ST+  Y  A    +G  D  L       LD  E D      
Sbjct: 268 WDDSS---SSWTVRLQRPASTIDCYTYASCGPFGYCDAMLAIPRCQCLDGFEPDTTNSSR 324

Query: 452 --RNKVHLNCSARD---VSELIPIPN-FITGGDKSYDELISRKNK 336
             R K  L C   +       + +P+ FI   ++S+DE  +  N+
Sbjct: 325 GCRRKQQLRCGDGNHFVTMSGMKVPDKFIPVPNRSFDECTAECNR 369


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 479 LDSLEVDVKRNKVHLNCSARDVSELIPIPNFITGGDKSYD 360
           L  ++VDV    +H+  +  DV + I I   I   D+SYD
Sbjct: 495 LPKMDVDVPLTSLHIRRTLLDVPKKIDILIVIMADDRSYD 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,632,416
Number of Sequences: 37544
Number of extensions: 312588
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)