Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0578
         (673 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    27   0.71 
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   3.8  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   6.6  

>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 477 RFTRSRCKEEQSTPELLSPRCLGTDS 400
           +F++  C E+Q  P + S +C GT +
Sbjct: 354 KFSQQNCCEQQHLPHVHSEKCAGTQT 379


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 97   IIMYLHCEFFILLSQFIKINDF 32
            I MYL+  FFI+   F  +N F
Sbjct: 1538 IYMYLYFVFFIIFGSFFTLNLF 1559


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 540 TWIYCGEWSHSSYGVTRNTIRAMRPL 617
           TW  CG++S+S +     T+  + P+
Sbjct: 189 TWNVCGDYSYSDHRYITYTVGTIVPV 214


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,567
Number of Sequences: 2352
Number of extensions: 13481
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)