Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0578
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    29   3.0  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -1

Query: 145 KKKTARKYSQMLYYIVIIMYLHCEFFILLSQFIKINDFGR 26
           K  + + + + +Y    ++ L C FFI+ + ++ +N F R
Sbjct: 206 KNGSQKSFQREMYLAFQVLVLLCAFFIMFAYYLAVNYFSR 245


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 288 SSPVICRLSYLNHMTVFIFP 347
           SSP +  L+YL+H+T F+FP
Sbjct: 174 SSPNLKDLNYLDHLTPFLFP 193


>Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical
           protein C32A9.1 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 617 EWSHSSYSVSGYTIRAMRPLSTVYPCAGVSMYGNMDICLPNLET 486
           EW+ + YS+SG+TI     L + Y C  V M  +++I   N ET
Sbjct: 146 EWAKNVYSLSGHTIILENNLGSKY-CM-VQMPASLEITWINYET 187


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 540 TWIYCGEWSHSSYGVTRNTIRAMRPLSIVSILP 638
           T I+CG W   +Y    NT   M P++ + + P
Sbjct: 525 TIIFCGSWYPENYLNLDNTTSVMHPVNYIHMNP 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,205
Number of Sequences: 27780
Number of extensions: 309931
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)