Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0578
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00750.1 68417.m00102 dehydration-responsive family protein s...    30   1.2  
At1g14740.1 68414.m01762 expressed protein                             29   3.7  
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains...    28   6.5  
At4g35580.1 68417.m05055 no apical meristem (NAM) family protein...    28   6.5  

>At4g00750.1 68417.m00102 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 507 YVHITIHTNACTWIYCGEWSHSSYGVTRNTIRAMRPLSIVSILPYILTP 653
           Y  I I     T+ + G W HS  G++R++I      S+    P+  TP
Sbjct: 23  YRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTSVPCTFPHQTTP 71


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +3

Query: 528 TNACTWIYC---GEWSHSSYGVTRNTIR 602
           +N C+W+ C     W H++ G+ +N I+
Sbjct: 449 SNTCSWVGCDVCSHWCHAACGIQKNLIK 476


>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 514

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 178 KTVLISREKYKLYSNNESISFIYIKIYRTIFESTVAFQAPSSVDSL 315
           KT+ +   + KLYSNN S ++     Y+    S V F+ P++ D+L
Sbjct: 169 KTIEVKNRERKLYSNNPSQNW---SGYKQTKWSHVTFEHPATFDTL 211


>At4g35580.1 68417.m05055 no apical meristem (NAM) family protein
           similar to TIP [Arabidopsis thaliana] GI:9408601;
           contains Pfam profile PF02365: No apical meristem (NAM)
           protein
          Length = 512

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 476 DSLEVDVKRNKVHLNCSARDVSELIPIPNFITGGDKSYDEL 354
           D   ++     + L+C   D    +P  + I  GD SYDE+
Sbjct: 220 DGTMIEAPEENLWLSCDLEDQKAPLPCMDSIYAGDFSYDEI 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,162
Number of Sequences: 28952
Number of extensions: 275461
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)