Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0575
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   1.4  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   1.8  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    24   4.2  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    24   4.2  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    24   5.5  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    23   7.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   9.6  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 62   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 196
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 83  VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 190
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 101 MKELCIMK--LLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDV-VKQFMEM 250
           M  LC     LL H+   T  E  KE   EYNIEK+ +    +D+ V+QF+++
Sbjct: 181 MDTLCFQAPVLLRHL---TFSEQRKEPISEYNIEKALN---GLDMSVEQFVDL 227


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 140 LQPTMFEDIKEIA---KEYNIEKSCDKYMNVDVVKQFMEMYRWACSRVERPSSTPT 298
           L  ++  DI ++A   KEY  +     + N DV K  +   +  C   E+P+ + T
Sbjct: 201 LSKSLLHDISKLALRSKEYYDDLDISFHFNTDVTKIDLAEKKIYCGSDEKPTESYT 256


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 17  WPRRH-SAISGGYGTMVFTKEPMVNLDMKMKELCIMKLLDHILQP 148
           W  RH  +IS  +G +   K+P V      + + +MK L ++  P
Sbjct: 473 WVSRHRGSISAEHG-LGLLKKPFVGYSKSKEMIHLMKTLKNVFDP 516


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   YYWPAWPRRHSAISGGYGTMVFT 70
           Y   A  RR + +SG + TM+FT
Sbjct: 63  YVLDATTRRSALLSGKHDTMIFT 85


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 176 AKEYNIEKSCDKYMNVDVVKQFMEM 250
           AK   I +SC KYMN D V Q  +M
Sbjct: 128 AKNLYICESCLKYMNSDHVLQRHKM 152


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 119  MKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDV 229
            +KLL+H+    +  D    AK   ++K   ++ N+DV
Sbjct: 1424 LKLLNHLTDDPVDVDFVLEAKRKLLKKQTQEWANLDV 1460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,836
Number of Sequences: 5004
Number of extensions: 20063
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)