Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0575
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0339 - 24513699-24516827 28 1.6
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 27 2.7
12_01_0862 + 8161117-8163913,8164000-8164019 27 3.6
08_02_1413 + 26897815-26899299 27 3.6
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 3.6
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 26 4.7
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 26 4.7
03_06_0275 + 32806682-32807197,32808118-32808198,32808293-328085... 26 4.7
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 26 6.3
11_06_0091 + 19967390-19969825 26 6.3
05_01_0330 - 2591652-2592485 26 6.3
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 26 6.3
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 25 8.3
04_01_0249 - 3284107-3286377 25 8.3
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 283 RSLHAGACPSIHLHELLNDI 224
RSLH +CP +H+ + LN++
Sbjct: 1015 RSLHISSCPKLHIPKSLNNL 1034
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 101 MKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYRWACSRVER 280
++ +C M+ H+L +A + M +D++ Q + +YRW+C R
Sbjct: 802 LRRVCSMEFRPHVLNSP-----DGLADPLLSSSAAPSNMGLDILPQSL-IYRWSCGHFSR 855
Query: 281 PSST 292
P T
Sbjct: 856 PLLT 859
>12_01_0862 + 8161117-8163913,8164000-8164019
Length = 938
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 104 KELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDK 211
K LC + +++ +++P ++EIA EY IEK D+
Sbjct: 451 KRLCKLLVVEGLVEPRKNMTLEEIAMEY-IEKLVDR 485
>08_02_1413 + 26897815-26899299
Length = 494
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 118 DAKLLHLHVKVYHWFLGEDHR 56
D ++LHL YHWFL + R
Sbjct: 259 DGEILHLLHLYYHWFLPPEER 279
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 67 HQGTNGKP*HEDEGALHHEAA*PYPPADHV*GHQGDRQ 180
H ++G H G H +PPA V GH DRQ
Sbjct: 546 HGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQ 583
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 53 GTMVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDK-YMNVD 226
G FT E ++ +E+C +LDH+ M +E+ E ++ SCD Y++++
Sbjct: 706 GDHPFTDEEECSVSGDEQEVCDNHILDHLCGKVM----EEVMDEADMHLSCDSDYIHIN 760
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 292 CGRRSLHAGACPSIHLHELLNDID 221
CG H GA HL +L++D +
Sbjct: 28 CGGEQAHVGAIQKTHLRDLMDDAE 51
>03_06_0275 +
32806682-32807197,32808118-32808198,32808293-32808568,
32808670-32809182
Length = 461
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 216 MYLSQLFSMLYSLAISLMSSNMVGW 142
M SQL ++L SL ++SN VGW
Sbjct: 1 MARSQLAALLISLCFLSLASNAVGW 25
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 161 DIKEIAKEYNIEKSCDKYMNVDV 229
DIK++ K+ IE + D+YM +DV
Sbjct: 232 DIKKVLKDILIEVNKDRYMVLDV 254
>11_06_0091 + 19967390-19969825
Length = 811
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 261 AHLYISMNCLTTSTFMYLSQLFSML 187
+HL ++ NCL+ + YLS L SM+
Sbjct: 556 SHLDLACNCLSGTIPQYLSNLTSMM 580
>05_01_0330 - 2591652-2592485
Length = 277
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 98 KMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKY 214
++K LC LDH+ +EI Y+I CD Y
Sbjct: 74 ELKILCSAHCLDHLFTSENPISAQEIGDLYDINIICDHY 112
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 41 SGGYGTMVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEK 199
+GGY + FT+E M N + L K+LD +IKEI K+Y +++
Sbjct: 340 AGGYENLGFTREDMKNRLYSKRSL---KILD-------VNNIKEIPKQYILQR 382
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 286 RRSLHAGACPSIHLHELLNDIDIHVLV 206
R+SL+A AC +IHL ++ + I+ +
Sbjct: 110 RQSLNAPACEAIHLTDIESSIECDTFI 136
>04_01_0249 - 3284107-3286377
Length = 756
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 101 MKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKY 214
+ +L + ++LD+ +PT + + +YN+ C +Y
Sbjct: 365 VSDLNLFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,536,732
Number of Sequences: 37544
Number of extensions: 155382
Number of successful extensions: 408
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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