Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0575
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)             27   2.1  
SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25)               27   2.8  
SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)             27   3.7  
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        27   3.7  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_46155| Best HMM Match : GSHPx (HMM E-Value=4.2039e-45)              26   6.5  

>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 122 KLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMY 253
           ++L+H +Q  + E IK +     I K C  YM+   V Q +  Y
Sbjct: 327 RVLEHFMQAFVPEIIKRLKDLAQIAKDCFTYMDRGFVFQMISYY 370


>SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25)
          Length = 346

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 146 PTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYRWACSRVERPSSTP 295
           PT  E   E+  E +      + +++D V+  + M +W+    ER +++P
Sbjct: 14  PTQIEMEDEVNSEMDSVSETSENVDLDAVQSLLAMSQWSPPTPERNTASP 63


>SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)
          Length = 556

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 41  SGGYGTMVFTKEPMVNLDMKMKELCIMKLLDHILQP 148
           + GYG MVF   P+ N    +K L   K   H  +P
Sbjct: 406 ANGYGVMVFDLTPVGNAASSIKALSTSKSTSHKPRP 441


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 118 DAKLLHLHVKVYHWF 74
           D  LLHLHV VY++F
Sbjct: 158 DVYLLHLHVSVYNYF 172


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 113  CIMKLLDHILQPTMFEDIKEIAKEY--NIEKSCDKYMNVDVVKQFMEMYRWACSRVE 277
            C++K+ DHI+  T      E+A E+  N+     K+   +  K F ++YR A  + E
Sbjct: 1151 CLLKIGDHIMDITSQYKDHEVASEWRRNLWTFVSKFTAFEAKKLF-KLYRHAVKKRE 1206


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 133 VKQLHDAKLLHLHVKVYHWFLGED 62
           +K LHD+ ++H+ +K  + F G D
Sbjct: 588 LKHLHDSGMVHMDIKPANVFFGHD 611


>SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 9   GLLGRGVTQRLVVATGRWSSPRNQW 83
           G    G T R   ATG+WS+P N +
Sbjct: 136 GFKAEGATIRTCGATGQWSTPWNTY 160


>SB_46155| Best HMM Match : GSHPx (HMM E-Value=4.2039e-45)
          Length = 188

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 143 QPTMFEDIKEIAKEYNIEKSCDKYMNVDV 229
           +P   E+IKE  K+YN+E   D +  ++V
Sbjct: 100 EPGTAEEIKEFVKQYNVE--FDMFAKIEV 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,283,618
Number of Sequences: 59808
Number of extensions: 179014
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)